Evidence map›Paper›PMID 25999573›Full record

ArticleGenome announcements2015

Complete Genome Sequence of Streptococcus thermophilus SMQ-301, a Model Strain for Phage-Host Interactions.

Simon J Labrie, Denise M Tremblay, Pier-Luc Plante, Jessica Wasserscheid, Ken Dewar, Jacques Corbeil, Sylvain Moineau

Abstract read
In one paragraph

Article in Genome announcements, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Comparative Genomics ofFrontiers in microbiology · 2019
    Article
  4. Article
  5. Article
  6. Article
  7. Complete Genome Sequence ofFrontiers in microbiology · 2017
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Simon J LabrieDépartement de Biochimie, de Microbiologie, et de Bio-Informatique, Faculté des Sciences et de Génie, Groupe de Recherche en Écologie Buccale, Faculté de Médecine Dentaire, Félix d'Hérelle Reference Center for Bacterial Viruses, Université Laval, Québec, Canada.
Denise M TremblayDépartement de Biochimie, de Microbiologie, et de Bio-Informatique, Faculté des Sciences et de Génie, Groupe de Recherche en Écologie Buccale, Faculté de Médecine Dentaire, Félix d'Hérelle Reference Center for Bacterial Viruses, Université Laval, Québec, Canada.
Pier-Luc PlanteDépartement de Médecine Moléculaire, Faculté de Médecine, Université Laval, Québec, Canada.
Jessica WasserscheidDepartment of Human Genetics, McGill University and Génome Québec Innovation Centre, Montréal, Canada.
Ken DewarDepartment of Human Genetics, McGill University and Génome Québec Innovation Centre, Montréal, Canada.
Jacques CorbeilDépartement de Médecine Moléculaire, Faculté de Médecine, Université Laval, Québec, Canada.
Sylvain MoineauDépartement de Biochimie, de Microbiologie, et de Bio-Informatique, Faculté des Sciences et de Génie, Groupe de Recherche en Écologie Buccale, Faculté de Médecine Dentaire, Félix d'Hérelle Reference Center for Bacterial Viruses, Université Laval, Québec, Canada sylvain.moineau@bcm.ulaval.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Streptococcus thermophilus is used by the dairy industry to manufacture yogurt and several cheeses. Using PacBio and Illumina platforms, we sequenced the genome of S. thermophilus SMQ-301, the host of several virulent phages. The genome is composed of 1,861,792 bp and contains 2,037 genes, 67 tRNAs, and 18 rRNAs.

Identifiers

PMID25999573
PMCPMC4440953

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.