Evidence map›Paper›PMID 25999407›Full record

ArticlePlant physiology2015

Evolutionary Dynamics of the Cellulose Synthase Gene Superfamily in Grasses.

Julian G Schwerdt, Katrin MacKenzie, Frank Wright, Daniel Oehme, John M Wagner, Andrew J Harvey, Neil J Shirley, Rachel A Burton, Miriam Schreiber, Claire Halpin and 4 more

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
8.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. The knockout of ClaCSLH1 induced dwarfing in watermelon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  4. ExploringGenes · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Unraveling the Potential of β-D-Glucans inLife (Basel, Switzerland) · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Genomic Architecture and Evolution of theFrontiers in plant science · 2022
    Article
  16. Species-Specific Gene Expansion of theFrontiers in plant science · 2022
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 4 countries.

Julian G SchwerdtAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).
Katrin MacKenzieAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).ORCID http://orcid.org/0000-0002-9567-1856
Frank WrightAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).
Daniel OehmeAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).
John M WagnerAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).
Andrew J HarveyAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).ORCID http://orcid.org/0000-0002-3488-0531
Neil J ShirleyAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).
Rachel A BurtonAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).
Miriam SchreiberAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).
Claire HalpinAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).ORCID http://orcid.org/0000-0002-1808-8130
Jochen ZimmerAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).
David F MarshallAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).
Robbie WaughAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.).
Geoffrey B FincherAustralian Research Council Centre of Excellence in Plant Cell Walls, University of Adelaide, Waite Campus, Glen Osmond, South Australia 5064, Australia (J.G.S., N.J.S., R.A.B., G.B.F.);Biomathematics and Statistics Scotland, Invergowrie, Dundee DD2 5DA United Kingdom (K.M., F.W);IBM Research Collaboratory for Life Sciences, University of Melbourne, Parkville, Victoria 3053, Australia (D.O., J.M.W.);Department of Genetics and Bioengineering, Yeditepe University, Kayisdagi, Istanbul 34755, Turkey (A.J.H.);Division of Plant Sciences, University of Dundee at the James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (M.S., C.H., R.W.);University of Virginia, School of Medicine, Charlottesville, Virginia 22908 (J.Z.); andJames Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (D.F.M., R.W.) geoff.fincher@adelaide.edu.au.
Australian Research Council · AUYeditepe University · TR

Funding

Biotechnology and Biological Sciences Research Council BB/G016232/1
6 · The paper itself

Abstract

Phylogenetic analyses of cellulose synthase (CesA) and cellulose synthase-like (Csl) families from the cellulose synthase gene superfamily were used to reconstruct their evolutionary origins and selection histories. Counterintuitively, genes encoding primary cell wall CesAs have undergone extensive expansion and diversification following an ancestral duplication from a secondary cell wall-associated CesA. Selection pressure across entire CesA and Csl clades appears to be low, but this conceals considerable variation within individual clades. Genes in the CslF clade are of particular interest because some mediate the synthesis of (1,3;1,4)-β-glucan, a polysaccharide characteristic of the evolutionarily successful grasses that is not widely distributed elsewhere in the plant kingdom. The phylogeny suggests that duplication of either CslF6 and/or CslF7 produced the ancestor of a highly conserved cluster of CslF genes that remain located in syntenic regions of all the grass genomes examined. A CslF6-specific insert encoding approximately 55 amino acid residues has subsequently been incorporated into the gene, or possibly lost from other CslFs, and the CslF7 clade has undergone a significant long-term shift in selection pressure. Homology modeling and molecular dynamics of the CslF6 protein were used to define the three-dimensional dispositions of individual amino acids that are subject to strong ongoing selection, together with the position of the conserved 55-amino acid insert that is known to influence the amounts and fine structures of (1,3;1,4)-β-glucans synthesized. These wall polysaccharides are attracting renewed interest because of their central roles as sources of dietary fiber in human health and for the generation of renewable liquid biofuels.

Indexed as

Evolution, MolecularGenes, PlantMultigene FamilyAmino AcidsAmino Acid SubstitutionChromosomes, PlantConserved SequenceGlucosyltransferasesModels, MolecularPhylogenyPoaceaeSelection, GeneticStructural Homology, ProteinAmino Acidscellulose synthaseGlucosyltransferases

Identifiers

PMID25999407
PMCPMC4741346
OpenAlexW1835323820

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.