Evidence map›Paper›PMID 25998616›Full record

Trial reportInternational journal of medical microbiology : IJMM

Virulence factors and mechanisms of antimicrobial resistance in Shigella strains from periurban areas of Lima (Peru).

Angela Lluque, Susan Mosquito, Cláudia Gomes, Maribel Riveros, David Durand, Drake H Tilley, María Bernal, Ana Prada, Theresa J Ochoa, Joaquim Ruiz

Open access · greenAbstract readRandomized Controlled Trial
In one paragraph

Trial report in International journal of medical microbiology : IJMM. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 2 pooled it
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 2 syntheses or guidelines pooled it, 54 citations in OpenAlex.

  1. The increasing antimicrobial resistance ofPathogens and global health · 2023
    Pooled it
  2. Pooled it
  3. Nutrients · 2026
    Article
  4. Article
  5. Traditional marketed meats as a reservoir of multidrug-resistant Escherichia coli.International microbiology : the official journal of the Spanish Society for Microbiology · 2025
    Article
  6. Article
  7. The Enterics for Global Health (EFGH)Open forum infectious diseases · 2024
    Article
  8. Article
  9. Article
  10. Trends in antimicrobial resistance ofJAC-antimicrobial resistance · 2023
    Article
  11. Article
  12. Article
  13. Burden, Antibiotic Resistance, and Clonality ofTropical medicine and infectious disease · 2021
    Article
  14. A high number of multidrug-resistant and predominant genetically related cluster of Shigella flexneri strains isolated over 34 years in Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  15. Article
  16. Article
  17. Shigella flexneri: an emerging pathogen.Folia microbiologica · 2020
    Review
  18. Virulence-Related Gene Distribution AmongInfection and drug resistance · 2020
    Article
  19. Article
  20. Virulence gene profiles ofPathogens and global health · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Angela LluqueUniversidad Peruana Cayetano Heredia, Instituto de Medicina Tropical Alexander Von Humboldt, Lima, Peru.
Susan MosquitoUniversidad Peruana Cayetano Heredia, Instituto de Medicina Tropical Alexander Von Humboldt, Lima, Peru.
Cláudia GomesISGlobal, Barcelona Ctr. Int. Health Res. (CRESIB), Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.
Maribel RiverosUniversidad Peruana Cayetano Heredia, Instituto de Medicina Tropical Alexander Von Humboldt, Lima, Peru.
David DurandUniversidad Peruana Cayetano Heredia, Instituto de Medicina Tropical Alexander Von Humboldt, Lima, Peru.
Drake H TilleyU.S Naval Medical Research Unit No.6, Callao, Peru.
María BernalU.S Naval Medical Research Unit No.6, Callao, Peru.
Ana PradaUniversidad Peruana Cayetano Heredia, Instituto de Medicina Tropical Alexander Von Humboldt, Lima, Peru.
Theresa J OchoaUniversidad Peruana Cayetano Heredia, Instituto de Medicina Tropical Alexander Von Humboldt, Lima, Peru; Center for Infectious Disease, University of Texas School of Public Health, Houston, USA. Electronic address: Theresa.J.Ochoa@uth.tmc.edu.
Joaquim RuizISGlobal, Barcelona Ctr. Int. Health Res. (CRESIB), Hospital Clínic - Universitat de Barcelona, Barcelona, Spain. Electronic address: joruiz@clinic.ub.es.
Universidad Peruana Cayetano Heredia · PENaval Medical Research Unit Six · PEUniversitat de Barcelona · ESThe University of Texas Health Science Center at Houston · US

Funding

Randomonized controlled trial-lactoferrin prevention of diarrhea in childrenR01HD051716 · NICHD · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI CLEARY, THOMAS GEORGE · 2007 to 2010
$960k
NICHD NIH HHS R01 HD051716NICHD NIH HHS R01-HD051716
6 · The paper itself

Abstract

The study was aimed to describe the serotype, mechanisms of antimicrobial resistance, and virulence determinants in Shigella spp. isolated from Peruvian children. Eighty three Shigella spp. were serogrouped and serotyped being established the antibiotic susceptibility. The presence of 12 virulence factors (VF) and integrase 1 and 2, along with commonly found antibiotic resistance genes was established by PCR. S. flexneri was the most relevant serogroup (55 isolates, 66%), with serotype 2a most frequently detected (27 of 55, 49%), followed by S. boydii and S. sonnei at 12 isolates each (14%) and S. dysenteriae (four isolates, 5%). Fifty isolates (60%) were multi-drug resistant (MDR) including 100% of S. sonnei and 64% of S. flexneri. Resistance levels were high to trimethoprim-sulfamethoxazole (86%), tetracycline (74%), ampicillin (67%), and chloramphenicol (65%). Six isolates showed decreased azithromycin susceptibility. No isolate was resistant to nalidixic acid, ciprofloxacin, nitrofurantoin, or ceftriaxone. The most frequent resistance genes were sul2 (95%), tet(B) (92%), cat (80%), dfrA1 (47%), blaOXA-1like (40%), with intl1 and intl2 detected in 51 and 52% of the isolates, respectively. Thirty-one different VF profiles were observed, being the ipaH (100%), sen (77%), virA and icsA (75%) genes the most frequently found. Differences in the prevalence of VF were observed between species with S. flexneri isolates, particularly serotype 2a, possessing high numbers of VF. In conclusion, this study highlights the high heterogeneity of Shigella VF and resistance genes, and prevalence of MDR organisms within this geographic region.

Indexed as

Drug Resistance, BacterialAnti-Bacterial AgentsDysentery, BacillaryHumansInfantMicrobial Sensitivity TestsPeruPolymerase Chain ReactionSerogroupShigellaSuburban PopulationVirulence FactorsAnti-Bacterial AgentsVirulence FactorsAntimicrobial resistanceAutotransportersEnterotoxinsIpaShigella serotypesShigellosis

Identifiers

PMID25998616
PMCPMC4461498
OpenAlexW238994921

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.