Evidence map›Paper›PMID 25998503›Full record

ArticleBioorganic & medicinal chemistry letters2015

Activity and anion inhibition studies of the α-carbonic anhydrase from Thiomicrospira crunogena XCL-2 Gammaproteobacterium.

Brian P Mahon, Natalia A Díaz-Torres, Melissa A Pinard, Chingkuang Tu, David N Silverman, Kathleen M Scott, Robert McKenna

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 9 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Brian P MahonDepartment of Biochemistry and Molecular Biology, University of Florida, College of Medicine, 100 Newell Dr LG-171, Gainesville, FL 32610, United States.
Natalia A Díaz-TorresDepartment of Biochemistry and Molecular Biology, University of Florida, College of Medicine, 100 Newell Dr LG-171, Gainesville, FL 32610, United States.
Melissa A PinardDepartment of Biochemistry and Molecular Biology, University of Florida, College of Medicine, 100 Newell Dr LG-171, Gainesville, FL 32610, United States.
Chingkuang TuDepartment of Biochemistry and Molecular Biology, University of Florida, College of Medicine, 100 Newell Dr LG-171, Gainesville, FL 32610, United States.
David N SilvermanDepartment of Pharmacology and Therapeutics, University of Florida, College of Medicine, Gainesville, FL 32610, United States.
Kathleen M ScottDepartment of Integrated Biology, University of South Florida, Tampa, FL 33620, United States.
Robert McKennaDepartment of Biochemistry and Molecular Biology, University of Florida, College of Medicine, 100 Newell Dr LG-171, Gainesville, FL 32610, United States. Electronic address: rmckenna@ufl.edu.
Florida College · USUniversity of Florida · USUniversity of South Florida · US

Funding

CATALYTIC MECHANISM OF CARBONIC ANHYDRASER01GM025154 · NIGMS · UNIVERSITY OF FLORIDA · PI SILVERMAN, DAVID N · 1985 to 2012
$4.5M
NIGMS NIH HHS GM25154NIGMS NIH HHS R01 GM025154
6 · The paper itself

Abstract

Thiomicrospira crunogena XCL-2 expresses an α-carbonic anhydrase (TcruCA). Sequence alignments reveal that TcruCA displays a high sequence identity (>30%) relative to other α-CAs. This includes three conserved histidines that coordinate the active site zinc, a histidine proton shuttling residue, and opposing hydrophilic and hydrophobic sides that line the active site. The catalytic efficiency of TcruCA is considered moderate relative to other α-CAs (k(cat)/K(M)=1.1×10(7) M(-1) s(-1)), being a factor of ten less efficient than the most active α-CAs. TcruCA is also inhibited by anions with Cl(-), Br(-), and I(-), all showing Ki values in the millimolar range (53-361 mM). Hydrogen sulfide (HS(-)) revealed the highest affinity for TcruCA with a Ki of 1.1 μM. It is predicted that inhibition of TcruCA by HS(-) (an anion commonly found in the environment where Thiomicrospira crunogena is located) is a way for Thiomicrospira crunogena to regulate its carbon-concentrating mechanism (CCM) and thus the organism's metabolic functions. Results from this study provide preliminary insights into the role of TcruCA in the general metabolism of Thiomicrospira crunogena.

Indexed as

Carbonic Anhydrase InhibitorsCarbonic AnhydrasesDose-Response Relationship, DrugGammaproteobacteriaMolecular StructureStructure-Activity RelationshipCarbonic Anhydrase InhibitorsCarbonic AnhydrasesAnionsCO(2) hydrationMesophileThiomicrospira crunogena XCL-2α-Carbonic anhydrase

Identifiers

PMID25998503
PMCPMC5358508
OpenAlexW236520104

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.