Evidence map›Paper›PMID 25998254›Full record

ArticleBiophysical journal2015

Thermodynamic Protein Destabilization by GFP Tagging: A Case of Interdomain Allostery.

Miri Sokolovski, Arnab Bhattacherjee, Naama Kessler, Yaakov Levy, Amnon Horovitz

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. A diminished hydrophobic effect inside the GroEL/ES cavity contributes to protein substrate destabilization.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Co-Translational Folding of Multi-Domain Proteins.Frontiers in molecular biosciences · 2022
    Review
  7. Nucleosome proteostasis and histone turnover.Frontiers in molecular biosciences · 2022
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Personalized disease signatures through information-theoretic compaction of big cancer data.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Miri SokolovskiDepartment of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.
Arnab BhattacherjeeDepartment of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.
Naama KesslerDepartment of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.
Yaakov LevyDepartment of Structural Biology, Weizmann Institute of Science, Rehovot, Israel. Electronic address: koby.levy@weizmann.ac.il.
Amnon HorovitzDepartment of Structural Biology, Weizmann Institute of Science, Rehovot, Israel. Electronic address: amnon.horovitz@weizmann.ac.il.
Weizmann Institute of Science · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Engrailed Homeodomain (EnHD) transcription factor of Drosophila melanogaster was fused to the enhanced green fluorescent protein (eGFP) either at its C- or N-terminus via three- or ten-residue flexible linkers. Here, we show that EnHD undergoes destabilization upon fusing it to eGFP regardless of the linker length used and whether the tethering is to its N- or C-terminus. The destabilization is reflected in melting points that are lower by up to 9°C. Thermodynamic analysis and coarse-grained molecular dynamic simulations indicate that this destabilization is due to eGFP-promoted entropic stabilization of the denatured state ensemble of EnHD. Our results provide, therefore, an example for destabilizing interdomain allostery. They are also important given the widespread use of eGFP tagging in cell biology, as they indicate that such tagging can cause unintended protein destabilization and concomitant effects.

Indexed as

Allosteric RegulationAnimalsCircular DichroismDrosophila melanogasterDrosophila ProteinsEscherichia coliGreen Fluorescent ProteinsHomeodomain ProteinsMolecular Dynamics SimulationProtein DenaturationProtein StabilityProtein Structure, TertiarySolutionsThermodynamicsTranscription FactorsDrosophila Proteinsenhanced green fluorescent proteinEn protein, DrosophilaGreen Fluorescent ProteinsHomeodomain ProteinsSolutionsTranscription Factors

Identifiers

PMID25998254
PMCPMC4576145
OpenAlexW2137939485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.