ArticlePlant biotechnology journal2016
Small RNA and degradome sequencing reveals important microRNA function in Astragalus chrysochlorus response to selenium stimuli.
Article in Plant biotechnology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed, 90 citations in OpenAlex.
- Integrated transcriptomics and metabolomics reveal key metabolic pathway responses in Mentha Piperita L. under selenite stress.BMC plant biology · 2025Article
- Genome-wide analysis of non-coding RNA reveals the role of a novel miR319c for tuber dormancy release process in potato.Horticulture research · 2025Article
- Predicted roles of long non-coding RNAs in abiotic stress tolerance responses of plants.Molecular horticulture · 2024Review
- Characterization of the microRNA408-LACCASE5 module as a regulatory axis for photosynthetic efficiency inFrontiers in genetics · 2023Article
- Small RNA and Degradome Deep Sequencing Reveals the Roles of microRNAs in Peanut (Frontiers in plant science · 2022Article
- CsbZIP2-miR9748-CsNPF4.4 Module Mediates High Temperature Tolerance of Cucumber Through Jasmonic Acid Pathway.Frontiers in plant science · 2022Article
- Transcriptome and proteome profiling revealed molecular mechanism of selenium responses in bread wheat (Triticum aestivum L.).BMC plant biology · 2021Article
- Review
- Article
- Genome-wide identification of low phosphorus responsive microRNAs in two soybean genotypes by high-throughput sequencing.Functional & integrative genomics · 2020Article
- Integration analysis of PacBio SMRT- and Illumina RNA-seq reveals candidate genes and pathway involved in selenium metabolism in hyperaccumulator Cardamine violifolia.BMC plant biology · 2020Article
- Stress induced dynamic adjustment of conserved miR164:NAC module.Plant-environment interactions (Hoboken, N.J.) · 2020Article
- Degradome, small RNAs and transcriptome sequencing of a high-nicotine cultivated tobacco uncovers miRNA's function in nicotine biosynthesis.Scientific reports · 2020Article
- Evolution of PHAS loci in the young spike of Allohexaploid wheat.BMC genomics · 2020Article
- Integrated microRNA and transcriptome profiling reveals a miRNA-mediated regulatory network of embryo abortion under calcium deficiency in peanut (Arachis hypogaea L.).BMC genomics · 2019Article
- Article
- Comparative proteomic analysis of pepper (PeerJ · 2019Article
- Biogenesis and regulatory hierarchy of phased small interfering RNAs in plants.Plant biotechnology journal · 2018Review
- Analysis of physiological and miRNA responses to Pi deficiency in alfalfa (Medicago sativa L.).Plant molecular biology · 2018Article
- Transcriptome analysis of differentially expressed genes involved in selenium accumulation in tea plant (Camellia sinensis).PloS one · 2018Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Selenium (Se), an essential element, plays important roles in human health as well as environmental sustainability. Se hyperaccumulating plants are thought as an alternative selenium resource, recently. Astragalus species are known as hyperaccumulator of Se by converting it to nonaminoacid compounds. However, Se-metabolism-related hyperaccumulation is not elucidated in plants yet. MicroRNAs (miRNAs) are key molecules in many biological and metabolic processes via targeting mRNAs, which may also play an important role in Se accumulation in plants. In this study, we identified 418 known miRNAs, belonging to 380 families, and 151 novel miRNAs induced by Se exposure in Astragalus chyrsochlorus callus. Among known miRNAs, the expression of 287 families was common in both libraries, besides 71 families were expressed only in Se-treated sample, whereas 60 conserved families were expressed in control tissue. miR1507a, miR1869 and miR2867-3p were mostly up-regulated, whereas miR1507-5p and miR8781b were significantly down-regulated by Se exposure. Computational analysis shows that the targets of miRNAs are involved in different types of biological mechanisms including 47 types of cellular component, 103 types of molecular function and 144 types of biological process. Degradome analysis shows that 1256 mRNAs were targeted by 499 miRNAs. We conclude that some known and novel miRNAs such as miR167a, miR319, miR1507a, miR4346, miR7767-3p, miR7800, miR9748 and miR-n93 target transcription factors, disease resistance proteins and some specific genes like cysteine synthase and might be related to plant hormone signal transduction, plant-pathogen interaction and sulphur metabolism pathways.
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