Evidence map›Paper›PMID 25998124›Full record

ArticleThe Journal of biological chemistry2015

Channel Gating Dependence on Pore Lining Helix Glycine Residues in Skeletal Muscle Ryanodine Receptor.

Yingwu Mei, Le Xu, David D Mowrey, Raul Mendez Giraldez, Ying Wang, Daniel A Pasek, Nikolay V Dokholyan, Gerhard Meissner

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yingwu MeiFrom the Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599.
Le XuFrom the Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599.
David D MowreyFrom the Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599.
Raul Mendez GiraldezFrom the Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599.
Ying WangFrom the Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599.
Daniel A PasekFrom the Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599.
Nikolay V DokholyanFrom the Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599.
Gerhard MeissnerFrom the Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599 meissner@med.unc.edu.
University of North Carolina at Chapel Hill · US

Funding

SARCOPLASMIC RETICULUM FUNCTION AND REASSEMBLYR01AR018687 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MEISSNER, GERHARD W · 1986 to 2009
$3.9M
SARCOPLASMIC RETICULUM FUNCTION AND REASSEMBLYR37AR018687 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MEISSNER, GERHARD W · 1990 to 2019
$3.8M
NIAMS NIH HHS AR018687NIAMS NIH HHS R01 AR018687NIAMS NIH HHS R37 AR018687
6 · The paper itself

Abstract

Type 1 ryanodine receptors (RyR1s) release Ca(2+) from the sarcoplasmic reticulum to initiate skeletal muscle contraction. The role of RyR1-G4934 and -G4941 in the pore-lining helix in channel gating and ion permeation was probed by replacing them with amino acid residues of increasing side chain volume. RyR1-G4934A, -G4941A, and -G4941V mutant channels exhibited a caffeine-induced Ca(2+) release response in HEK293 cells and bound the RyR-specific ligand [(3)H]ryanodine. In single channel recordings, significant differences in the number of channel events and mean open and close times were observed between WT and RyR1-G4934A and -G4941A. RyR1-G4934A had reduced K(+) conductance and ion selectivity compared with WT. Mutations further increasing the side chain volume at these positions (G4934V and G4941I) resulted in reduced caffeine-induced Ca(2+) release in HEK293 cells, low [(3)H]ryanodine binding levels, and channels that were not regulated by Ca(2+) and did not conduct Ca(2+) in single channel measurements. Computational predictions of the thermodynamic impact of mutations on protein stability indicated that although the G4934A mutation was tolerated, the G4934V mutation decreased protein stability by introducing clashes with neighboring amino acid residues. In similar fashion, the G4941A mutation did not introduce clashes, whereas the G4941I mutation resulted in intersubunit clashes among the mutated isoleucines. Co-expression of RyR1-WT with RyR1-G4934V or -G4941I partially restored the WT phenotype, which suggested lessening of amino acid clashes in heterotetrameric channel complexes. The results indicate that both glycines are important for RyR1 channel function by providing flexibility and minimizing amino acid clashes.

Indexed as

Amino Acid SubstitutionAnimalsCaffeineCalcium SignalingGlycineHEK293 CellsHumansIon Channel GatingModels, MolecularMuscle ContractionMuscle, SkeletalMutagenesis, Site-DirectedProtein Structure, QuaternaryProtein Structure, SecondaryRabbitsRecombinant ProteinsCaffeineGlycineRecombinant ProteinsRyanodine Receptor Calcium Release Channelbiophysicscalcium transportcomputationryanodine receptorsarcoplasmic reticulum (SR)skeletal muscle

Identifiers

PMID25998124
PMCPMC4498087
OpenAlexW215096444

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.