Evidence map›Paper›PMID 25996954›Full record

ArticlePloS one2015

A Pectate Lyase-Coding Gene Abundantly Expressed during Early Stages of Infection Is Required for Full Virulence in Alternaria brassicicola.

Yangrae Cho, Mina Jang, Akhil Srivastava, Jae-Hyuk Jang, Nak-Kyun Soung, Sung-Kyun Ko, Dae-Ook Kang, Jong Seog Ahn, Bo Yeon Kim

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Study on Pathogenesis ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  2. A PL1 family pectate lyaseFrontiers in microbiology · 2024
    Article
  3. Article
  4. Article
  5. Genome analysis ofFrontiers in microbiology · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. The MAP Kinase Kinase GeneThe plant pathology journal · 2019
    Article
  10. Article
  11. The Multifaceted Role of Pectin Methylesterase Inhibitors (PMEIs).International journal of molecular sciences · 2018
    Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Yangrae ChoIncurable Diseases Research Center (WCI), Bio-Therapeutics Research Institute, Korea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk, 363-883, Republic of Korea.
Mina JangChemical Biology Research Center, Bio-Therapeutics Research Institute, Korea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk, 363-883, Republic of Korea; Department of Bio Health Science, Changwon National University, Uichang-gu, Changwon-si, Gyeongsangnam-do, 641-773, Republic of Korea.
Akhil SrivastavaStephenson Cancer Center, University of Oklahoma Health Science Center, Oklahoma City, OK, 73104, United States of America.
Jae-Hyuk JangChemical Biology Research Center, Bio-Therapeutics Research Institute, Korea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk, 363-883, Republic of Korea.
Nak-Kyun SoungIncurable Diseases Research Center (WCI), Bio-Therapeutics Research Institute, Korea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk, 363-883, Republic of Korea.
Sung-Kyun KoChemical Biology Research Center, Bio-Therapeutics Research Institute, Korea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk, 363-883, Republic of Korea.
Dae-Ook KangDepartment of Bio Health Science, Changwon National University, Uichang-gu, Changwon-si, Gyeongsangnam-do, 641-773, Republic of Korea.
Jong Seog AhnChemical Biology Research Center, Bio-Therapeutics Research Institute, Korea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk, 363-883, Republic of Korea.
Bo Yeon KimIncurable Diseases Research Center (WCI), Bio-Therapeutics Research Institute, Korea Research Institute of Bioscience and Biotechnology, Ochang, Chungbuk, 363-883, Republic of Korea.
Korea Research Institute of Bioscience and Biotechnology · KRChangwon National University · KRUniversity of Oklahoma Health Sciences Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alternaria brassicicola causes black spot disease of Brassica species. The functional importance of pectin digestion enzymes and unidentified phytotoxins in fungal pathogenesis has been suspected but not verified in A. brassicicola. The fungal transcription factor AbPf2 is essential for pathogenicity and induces 106 genes during early pathogenesis, including the pectate lyase-coding gene, PL1332. The aim of this study was to test the importance and roles of PL1332 in pathogenesis. We generated deletion strains of the PL1332 gene, produced heterologous PL1332 proteins, and evaluated their association with virulence. Deletion strains of the PL1332 gene were approximately 30% less virulent than wild-type A. brassicicola, without showing differences in colony expansion on solid media and mycelial growth in nutrient-rich liquid media or minimal media with pectins as a major carbon source. Heterologous PL1332 expressed as fusion proteins digested polygalacturons in vitro. When the fusion proteins were injected into the apoplast between leaf veins of host plants the tissues turned dark brown and soft, resembling necrotic leaf tissue. The PL1332 gene was the first example identified as a general toxin-coding gene and virulence factor among the 106 genes regulated by the transcription factor, AbPf2. It was also the first gene to have its functions investigated among the 19 pectate lyase genes and several hundred putative cell-wall degrading enzymes in A. brassicicola. These results further support the importance of the AbPf2 gene as a key pathogenesis regulator and possible target for agrochemical development.

Indexed as

Gene Expression Regulation, FungalAlternariaBrassicaEnzyme ActivationEscherichia coliFungal ProteinsGene DeletionNecrosisPhenotypePlant DiseasesPolysaccharide-LyasesVirulenceFungal Proteinspectate lyasePolysaccharide-Lyases

Identifiers

PMID25996954
PMCPMC4440746
OpenAlexW1507418520

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.