Evidence map›Paper›PMID 25996639›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2016

Exome sequencing identifies rare variants in multiple genes in atrioventricular septal defect.

Lisa C A D'Alessandro, Saeed Al Turki, Ashok Kumar Manickaraj, Dorin Manase, Barbara J M Mulder, Lynn Bergin, Herschel C Rosenberg, Tapas Mondal, Elaine Gordon, Jane Lougheed and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
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  4. Human Genetics of Atrioventricular Septal Defect.Advances in experimental medicine and biology · 2024
    Review
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  12. Review
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  15. Genetics of atrioventricular canal defects.Italian journal of pediatrics · 2020
    Review
  16. Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 11 institutions in 6 countries.

Lisa C A D'AlessandroDivision of Cardiology, Department of Pediatrics, Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0002-9734-7152
Saeed Al TurkiWellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Ashok Kumar ManickarajDivision of Cardiology, Department of Pediatrics, Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada.
Dorin ManaseDivision of Cardiology, Department of Pediatrics, Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada.
Barbara J M MulderHeart Center, Academic Medical Center, Amsterdam, The Netherlands.
Lynn BerginDivision of Cardiology, Department of Medicine, London Health Sciences Centre, London, Ontario, Canada.
Herschel C RosenbergDepartment of Paediatrics, London Health Sciences Centre, London, Ontario, Canada.
Tapas MondalDepartment of Pediatrics, Hamilton Health Sciences Centre, Hamilton, Ontario, Canada.ORCID http://orcid.org/0000-0003-2077-1710
Elaine GordonDivision of Cardiology, Department of Medicine, Hamilton Health Sciences Centre, Hamilton, Ontario, Canada.
Jane LougheedDivision of Cardiology, Department of Pediatrics, Children's Hospital of Eastern Ontario, Ottawa, Ontario, Canada.
John SmytheDepartment of Pediatrics, Kingston General Hospital, Kingston, Ontario, Canada.
Koen DevriendtCentre for Human Genetics, Katholieke Universiteit Leuven, Leuven, Belgium.
Shoumo BhattacharyaRadcliffe Department of Medicine & Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Hugh WatkinsRadcliffe Department of Medicine & Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Jamie BenthamDepartment of Cardiology, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts USA.
Sarah BowdinDivision of Genetics, Department of Pediatrics, Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada.
Matthew E HurlesWellcome Trust Sanger Institute, Hinxton, Cambridge, UK.
Seema MitalDivision of Cardiology, Department of Pediatrics, Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0002-7643-4484
SickKids Foundation · CALondon Health Sciences Centre · CAAcademic Medical Center · NLCentre for Human Genetics · GBHamilton Health Sciences · CAHarvard University · USKing Abdulaziz Medical City · SAKingston General Hospital · CAKU Leuven · BEUniversity of Oxford · GBWellcome Sanger Institute · GB

Funding

British Heart Foundation CH/09/003/26631British Heart Foundation PG/07/045/22690British Heart Foundation RG/10/17/28553Wellcome Trust 090532Wellcome Trust 098051Wellcome Trust WT098051
6 · The paper itself

Abstract

purposeThe genetic etiology of atrioventricular septal defect (AVSD) is unknown in 40% cases. Conventional sequencing and arrays have identified the etiology in only a minority of nonsyndromic individuals with AVSD.

methodsWhole-exome sequencing was performed in 81 unrelated probands with AVSD to identify potentially causal variants in a comprehensive set of 112 genes with strong biological relevance to AVSD.

resultsA significant enrichment of rare and rare damaging variants was identified in the gene set, compared with controls (odds ratio (OR): 1.52; 95% confidence interval (CI): 1.35-1.71; P = 4.8 × 10(-11)). The enrichment was specific to AVSD probands, compared with a cohort without AVSD with tetralogy of Fallot (OR: 2.25; 95% CI: 1.84-2.76; P = 2.2 × 10(-16)). Six genes (NIPBL, CHD7, CEP152, BMPR1a, ZFPM2, and MDM4) were enriched for rare variants in AVSD compared with controls, including three syndrome-associated genes (NIPBL, CHD7, and CEP152). The findings were confirmed in a replication cohort of 81 AVSD probands.

conclusionMutations in genes with strong biological relevance to AVSD, including syndrome-associated genes, can contribute to AVSD, even in those with isolated heart disease. The identification of a gene set associated with AVSD will facilitate targeted genetic screening in this cohort.

Indexed as

ExomeGenetic VariationAdolescentCohort StudiesDNA Mutational AnalysisFemaleGenotypeHeart Septal DefectsHumansMaleMutationPhenotypeSequence Analysis, DNA

Identifiers

PMID25996639
PMCPMC5988035
OpenAlexW247100659

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.