Evidence map›Paper›PMID 25996283›Full record

ArticleEpigenetics2015

EGFR promoter exhibits dynamic histone modifications and binding of ASH2L and P300 in human germinal matrix and gliomas.

Parsa Erfani, Jessica Tome-Garcia, Peter Canoll, Fiona Doetsch, Nadejda M Tsankova

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Circulating Tumor Cells for Glioma.Frontiers in oncology · 2021
    Review
  6. Review
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Parsa Erfania Department of Pathology & Cell Biology; Columbia University Medical Center ; New York , NY , USA.
Jessica Tome-Garcia
Peter Canoll
Fiona Doetsch
Nadejda M Tsankova
New York Proton Center · USUniversity of Basel · CH

Funding

Clinical and Translational Science AwardUL1TR000040 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$26.2M
Prospective Purification of Adult Stem Cell AstrocytesR01NS074039 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHELANSKI, MICHAEL L · 2011 to 2015
$1.7M
BD Biosciences InfluxS10OD020056 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SNOECK, HANS-WILLEM E · 2015 to 2015
$600k
NCATS NIH HHS UL1 TR000040NIH HHS S10OD020056NINDS NIH HHS R01 NS074039
6 · The paper itself

Abstract

Several signaling pathways important for the proliferation and growth of brain cells are pathologically dysregulated in gliomas, including the epidermal growth factor receptor (EGFR). Expression of EGFR is high in neural progenitors during development and in gliomas but decreases significantly in most adult brain regions. Here we show that EGFR expression is maintained in the astrocyte ribbon of the adult human subventricular zone. The transcriptional regulation of EGFR expression is poorly understood. To investigate the role of epigenetics on EGFR regulation in the contexts of neural development and gliomagenesis, we measured levels of DNA methylation and histone H3 modifications at the EGFR promoter in human brain tissues, glioma specimens, and EGFR-expressing neural cells, acutely isolated from their native niche. While DNA was constitutively hypomethylated in non-neoplastic and glioma samples, regardless of their EGFR-expression status, the activating histone modifications H3K27ac and H3K4me3 were enriched only when EGFR is highly expressed (developing germinal matrix and gliomas). Conversely, repressive H3K27me3 marks predominated in adult white matter where EGFR is repressed. Furthermore, the histone methyltransferase core enzyme ASH2L was bound at EGFR in the germinal matrix and in gliomas where levels of H3K4me3 are high, and the histone acetyltransferase P300 was bound in samples with H3K27ac enrichment. Our studies use human cells and tissues undisturbed by cell-culture artifact, and point to an important, locus-specific role for chromatin remodeling in EGFR expression in human neural development that may be dysregulated during gliomagenesis, unraveling potential novel targets for future drug therapy.

Indexed as

BrainDNA-Binding ProteinsDNA MethylationEpigenesis, GeneticErbB ReceptorsGene Expression Regulation, DevelopmentalGene Expression Regulation, NeoplasticGliomaHistone CodeHistonesHumansNeurogenesisNuclear Proteinsp300-CBP-Associated Factorp300-CBP Transcription FactorsPromoter Regions, GeneticASH2L protein, humanDNA-Binding ProteinsEGFR protein, humanErbB ReceptorsHistonesNuclear Proteinsp300-CBP-Associated Factorp300-CBP Transcription FactorsTranscription FactorsASH2L histone methyltransferaseDNA methylationEGFR promotergerminal matrixgliomagenesisH3K27 acetylationH3K4 methylationhuman neural progenitorsP300/CBP histone acetyltransferasesubventricular zone

Identifiers

PMID25996283
PMCPMC4622924
OpenAlexW1511738088

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.