Evidence map›Paper›PMID 25995792›Full record

ArticleThe Pan African medical journal2014

Impact of pre-analytical factors on mycobacterium cultures contaminations rates in Burkina Faso, West Africa.

Antoinette Kaboré, Hervé Hien, Adama Sanou, Dézémon Zingué, Géraldine Daneau, Zakaria Ganamé, Moumini Nouctara, Mamoudou Ouédraogo, Oumarou Ouédraogo, Félicité Koutou and 5 more

Open access · goldAbstract read
In one paragraph

Article in The Pan African medical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact, top 84% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Antoinette KaboréDepartment of transmissible diseases, Centre Muraz, Bobo-Dioulasso, Burkina Faso.
Hervé HienDepartment of transmissible diseases, Centre Muraz, Bobo-Dioulasso, Burkina Faso ; Institut de Recherche en Sciences de la Santé (IRSS), Direction Régionale de l'Ouest (DRO), Bobo-Dioulasso, Burkina Faso.
Adama SanouDepartment of transmissible diseases, Centre Muraz, Bobo-Dioulasso, Burkina Faso ; Centre Hospitalier Régional Universitaire (CHRU) de Montpellier, département de Bactériologie-Virologie, Montpellier, France.
Dézémon ZinguéDepartment of transmissible diseases, Centre Muraz, Bobo-Dioulasso, Burkina Faso.
Géraldine DaneauBiomedical Science Department, Institute of Tropical Medicine, Antwerp, Belgium.
Zakaria GanaméDepartment of transmissible diseases, Centre Muraz, Bobo-Dioulasso, Burkina Faso.
Moumini NouctaraDepartment of transmissible diseases, Centre Muraz, Bobo-Dioulasso, Burkina Faso.
Mamoudou OuédraogoDepartment of transmissible diseases, Centre Muraz, Bobo-Dioulasso, Burkina Faso.
Oumarou OuédraogoDepartment of transmissible diseases, Centre Muraz, Bobo-Dioulasso, Burkina Faso.
Félicité KoutouDistrict Sanitaire de DAFRA, Bobo-Dioulasso, Burkina Faso.
Michel GomgnimbouDepartment of transmissible diseases, Centre Muraz, Bobo-Dioulasso, Burkina Faso.
Nicolas MédaDepartment of transmissible diseases, Centre Muraz, Bobo-Dioulasso, Burkina Faso.
Dorine NeveuUniversity Montpellier 1, INSERM U1058 Infection by HIV and agents with mucocutaneous tropism from pathogenesis to prevention, Montpellier, France.
Sylvain GodreuilCentre Hospitalier Régional Universitaire (CHRU) de Montpellier, département de Bactériologie-Virologie, Montpellier, France.
Lassana SangaréBacteriology-Virology Department, CHU Yalgado Ouedraogo, Ouagadougou, Burkina Faso ; Departement of health sciences, University of Ouagadougou/Burkina Faso.
Centre Muraz · BFCentre Hospitalier Universitaire de Montpellier · FRCentre Hospitalier Universitaire Yalgado Ouédraogo · BFInserm · FRInstituut voor Tropische Geneeskunde · BENazi Boni University · BF

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionFor a high quality level diagnosis, mycobacterium culture must comply with the pre-analytical and analytical conditions recommended by the WHO and the country National Tuberculosis Program (NTP). In this study, we determined whether temperature and duration of sputum storage were associated with culture contamination in Burkina Faso.

methodsSputa were collected in 5 districts labs in Burkina Faso. Temperature and duration of sputum storage were recorded. After the collection, sputa were decontaminated using Petroff modified method, and the pellet was inoculated on LJ media and LJ media supply with 2% sodium pyruvate. Risk of culture contamination associated with temperature and duration of sputum storage was measured by Chi2 test and logistic regression.

resultsOut of 404 specimens, 61% (246/404) were stored between 2 and 8°C, and 15% (61/404) were processed within three days. The global contamination rate was 24%, with only 8% for samples respecting WHO recommendations, up to 35% for others. Storage at room temperature was associated with a significantly higher risk of contamination compared to storage at 2-8°C (OR 2.24, p = 0.001, IC 95%).

conclusionThe recommendations about the temperature and the duration of sputum storage before cultures are not completely respected. This leads to high contamination rate of mycobacterium culture. It will be necessary to take logistics measures in peripherals health services or to develop more selective medium for mycobacterium culture in low income countries.

Indexed as

AdolescentAdultAgedAged, 80 and overBurkina FasoEquipment ContaminationFemaleHumansMaleMicrobiological TechniquesMiddle AgedMycobacteriumSpecimen HandlingSputumTuberculosisYoung AdultcontaminationSputumstorage

Identifiers

PMID25995792
PMCPMC4430149
OpenAlexW2157907312

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.