Evidence map›Paper›PMID 25994933›Full record

ArticleGenome biology and evolution2015

Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod (Gadus morhua L.).

Paul R Berg, Sissel Jentoft, Bastiaan Star, Kristoffer H Ring, Halvor Knutsen, Sigbjørn Lien, Kjetill S Jakobsen, Carl André

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
17.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 214 citations in OpenAlex.

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  20. The paradox of adaptive trait clines with nonclinal patterns in the underlying genes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Paul R BergCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Norway.
Sissel JentoftCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Norway.
Bastiaan StarCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Norway.
Kristoffer H RingCentre for Development and the Environment (SUM), University of Oslo, Norway.
Halvor KnutsenCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Norway Institute of Marine Research (IMR), Flødevigen, His, Norway University of Agder, Kristiansand, Norway.
Sigbjørn LienCentre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, Aas, Norway.
Kjetill S JakobsenCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Norway k.s.jakobsen@ibv.uio.no.
Carl AndréDepartment of Biology and Environmental Sciences-Tjärnö, University of Gothenburg, Strömstad, Sweden.
University of Oslo · NONorwegian University of Life Sciences · NOUniversity of Agder · NOUniversity of Gothenburg · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

How genomic selection enables species to adapt to divergent environments is a fundamental question in ecology and evolution. We investigated the genomic signatures of local adaptation in Atlantic cod (Gadus morhua L.) along a natural salinity gradient, ranging from 35‰ in the North Sea to 7‰ within the Baltic Sea. By utilizing a 12 K SNPchip, we simultaneously assessed neutral and adaptive genetic divergence across the Atlantic cod genome. Combining outlier analyses with a landscape genomic approach, we identified a set of directionally selected loci that are strongly correlated with habitat differences in salinity, oxygen, and temperature. Our results show that discrete regions within the Atlantic cod genome are subject to directional selection and associated with adaptation to the local environmental conditions in the Baltic- and the North Sea, indicating divergence hitchhiking and the presence of genomic islands of divergence. We report a suite of outlier single nucleotide polymorphisms within or closely located to genes associated with osmoregulation, as well as genes known to play important roles in the hydration and development of oocytes. These genes are likely to have key functions within a general osmoregulatory framework and are important for the survival of eggs and larvae, contributing to the buildup of reproductive isolation between the low-salinity adapted Baltic cod and the adjacent cod populations. Hence, our data suggest that adaptive responses to the environmental conditions in the Baltic Sea may contribute to a strong and effective reproductive barrier, and that Baltic cod can be viewed as an example of ongoing speciation.

Indexed as

Polymorphism, Single NucleotideSalinitySelection, GeneticAdaptation, PhysiologicalAnimalsGadus morhuaGenesGenomeGenomicsLinkage DisequilibriumAtlantic codBaltic Seaecological divergencegenomic adaptationpopulation genomicsSNPsspeciation

Identifiers

PMID25994933
PMCPMC4494048
OpenAlexW1943915788

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.