Evidence map›Paper›PMID 25994932›Full record

ArticleGenome biology and evolution2015

Evolution of the Translocation and Assembly Module (TAM).

Eva Heinz, Joel Selkrig, Matthew J Belousoff, Trevor Lithgow

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 83 citations in OpenAlex.

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  6. Polydextrose reduces the infection ofMicrobiology spectrum · 2025
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  13. POTRA domains of the TamA insertase interact with the outer membrane and modulate membrane properties.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  20. TheAnnual review of microbiology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Eva HeinzDepartment of Microbiology, Monash University, Melbourne, Victoria, Australia.
Joel SelkrigDepartment of Biochemistry & Molecular Biology, Monash University, Melbourne, Victoria, Australia Present address: European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.
Matthew J BelousoffDepartment of Microbiology, Monash University, Melbourne, Victoria, Australia.
Trevor LithgowDepartment of Microbiology, Monash University, Melbourne, Victoria, Australia trevor.lithgow@monash.edu.
Monash University · AUEuropean Molecular Biology Laboratory · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial outer membrane proteins require the beta-barrel assembly machinery (BAM) for their correct folding and function. The central component of this machinery is BamA, an Omp85 protein that is essential and found in all Gram-negative bacteria. An additional feature of the BAM is the translocation and assembly module (TAM), comprised TamA (an Omp85 family protein) and TamB. We report that TamA and a closely related protein TamL are confined almost exclusively to Proteobacteria and Bacteroidetes/Chlorobi respectively, whereas TamB is widely distributed across the majority of Gram-negative bacterial lineages. A comprehensive phylogenetic and secondary structure analysis of the TamB protein family revealed that TamB was present very early in the evolution of bacteria. Several sequence characteristics were discovered to define the TamB protein family: A signal-anchor linkage to the inner membrane, beta-helical structure, conserved domain architecture and a C-terminal region that mimics outer membrane protein beta-strands. Taken together, the structural and phylogenetic analyses suggest that the TAM likely evolved from an original combination of BamA and TamB, with a later gene duplication event of BamA, giving rise to an additional Omp85 sequence that evolved to be TamA in Proteobacteria and TamL in Bacteroidetes/Chlorobi.

Indexed as

Evolution, MolecularAmino Acid MotifsBacterial Outer Membrane ProteinsBacteroidetesGenetic VariationMultigene FamilyPhylogenyProteobacteriaBacterial Outer Membrane Proteinsbeta-barrel assemblymembrane biogenesisouter membraneTamATamBtranslocation

Identifiers

PMID25994932
PMCPMC4494059
OpenAlexW2123930272

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.