Evidence map›Paper›PMID 25994869›Full record

ArticleJournal of human genetics2015

Genetic association of key Th1/Th2 pathway candidate genes, IRF2, IL6, IFNGR2, STAT4 and IL4RA, with atopic asthma in the Indian population.

Amrendra Kumar, Sudipta Das, Anurag Agrawal, Indranil Mukhopadhyay, Balaram Ghosh

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
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  5. Winds of change a tale of: asthma and microbiome.Frontiers in microbiology · 2023
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  8. Immune Response-Related Genes -Pharmacogenomics and personalized medicine · 2020
    Article
  9. Article
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  11. Article
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  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Amrendra KumarMolecular Immunogenetics Laboratory, CSIR-Institute of Genomics and Integrative Biology, Delhi, India.
Sudipta DasMolecular Immunogenetics Laboratory, CSIR-Institute of Genomics and Integrative Biology, Delhi, India.
Anurag AgrawalCentre of Excellence for Translational Research in Asthma and Lung Disease, CSIR-Institute of Genomics and Integrative Biology, Delhi, India.
Indranil MukhopadhyayHuman Genetics unit, Indian Statistical Institute, Kolkata, India.
Balaram GhoshMolecular Immunogenetics Laboratory, CSIR-Institute of Genomics and Integrative Biology, Delhi, India.
Institute of Genomics and Integrative Biology · INIndian Statistical Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Asthma is a complex, multifactorial disease resulting due to dysregulated immune responses. Genetic factors contribute significantly to asthma pathogenesis, and identification of these factors is one of the major goals in understanding the disease. Th1/Th2 helper differentiation has a critical role in modulating the phenotypes associated with atopic asthma. This study was aimed at identifying genetic modifiers of asthma in selected genes involved in T helper differentiation. A total of 354 single-nucleotide polymorphisms (SNPs) in 33 candidate genes were genotyped in a case-control cohort (cases=147, controls=199) and families (n=247) using Illumina's Golden Gate Assay. Five SNPs, rs3733475A/C (IRF2), rs2069832A/G (IL6), rs2012075G/A (IFNGR2) and rs1400656G/A (STAT4) and rs1805011C/A (IL4RA) were found to be associated with asthma in family based as well as in case-control analyses (P=0.002, P=0.001, P=0.004, P=0.003 and P=0.001, respectively). Interestingly, the minor alleles at these loci showed a protective effect. A five loci haplotype, TAACG, in IRF2 gene, was significantly associated with asthma in families (P=1.1 × 10(-6)) and in case-control cohort (P=0.01). In conclusion, our studies led to identification of some key candidate genes, namely IRF2, IL6, IFNGR2, STAT4 and IL4RA that modulate genetic susceptibility to asthma in the Indian population. Also, this is the first report of independent association of IL6 gene polymorphism with atopic asthma.

Indexed as

AdultAsthmaCase-Control StudiesCell DifferentiationFemaleGenetic Association StudiesHumansIndiaInterferon Regulatory Factor-2Interleukin-4 Receptor alpha SubunitInterleukin-6MaleMiddle AgedReceptors, InterferonSignal TransductionSTAT4 Transcription FactorIFNGR2 protein, humanIL4R protein, humanIL6 protein, humanInterferon Regulatory Factor-2Interleukin-4 Receptor alpha SubunitInterleukin-6IRF2 protein, humanReceptors, InterferonSTAT4 protein, humanSTAT4 Transcription Factor

Identifiers

PMID25994869
OpenAlexW1668974434

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.