Evidence map›Paper›PMID 25993664›Full record

ArticlePloS one2015

HLA Class I and II Blocks Are Associated to Susceptibility, Clinical Subtypes and Autoantibodies in Mexican Systemic Sclerosis (SSc) Patients.

Tatiana S Rodriguez-Reyna, Pamela Mercado-Velázquez, Neng Yu, Sharon Alosco, Marina Ohashi, Tatiana Lebedeva, Alfredo Cruz-Lagunas, Carlos Núñez-Álvarez, Javier Cabiedes-Contreras, Gilberto Vargas-Alarcón and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
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  7. Proceedings of the National Academy of Sciences of the United States of America · 2020
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  12. Journal of immunology research · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Tatiana S Rodriguez-ReynaDepartment of Immunology and Rheumatology, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, Mexico City, Mexico.
Pamela Mercado-VelázquezDepartment of Immunology and Rheumatology, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, Mexico City, Mexico.
Neng YuHLA laboratory, The American Red Cross Northeast Division, Dedham, Massachusetts, United States of America.
Sharon AloscoHLA laboratory, The American Red Cross Northeast Division, Dedham, Massachusetts, United States of America.
Marina OhashiHLA laboratory, The American Red Cross Northeast Division, Dedham, Massachusetts, United States of America.
Tatiana LebedevaHLA laboratory, The American Red Cross Northeast Division, Dedham, Massachusetts, United States of America.
Alfredo Cruz-LagunasDepartment of Immunology, Instituto Nacional de Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, Mexico.
Carlos Núñez-ÁlvarezDepartment of Immunology and Rheumatology, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, Mexico City, Mexico.
Javier Cabiedes-ContrerasDepartment of Immunology and Rheumatology, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, Mexico City, Mexico.
Gilberto Vargas-AlarcónBasic and Technological Research Subdirection, Instituto Nacional de Cardiología Ignacio Chávez, Mexico City, Mexico.
Julio GranadosTransplant Department, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, Mexico City, Mexico.
Joaquin ZúñigaDepartment of Immunology, Instituto Nacional de Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City, Mexico.
Edmond YunisDepartment of Cancer Immunology and AIDS, Dana Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts, United States of America; Harvard Medical School, Boston, Massachusetts, United States of America.
Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán · MXAmerican Red Cross · USInstituto Nacional de Enfermedades Respiratorias · MXDana-Farber Cancer Institute · USInstituto Nacional de Cardiología · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionHuman leukocyte antigen (HLA) polymorphism studies in Systemic Sclerosis (SSc) have yielded variable results. These studies need to consider the genetic admixture of the studied population. Here we used our previously reported definition of genetic admixture of Mexicans using HLA class I and II DNA blocks to map genetic susceptibility to develop SSc and its complications.

methodsWe included 159 patients from a cohort of Mexican Mestizo SSc patients. We performed clinical evaluation, obtained SSc-associated antibodies, and determined HLA class I and class II alleles using sequence-based, high-resolution techniques to evaluate the contribution of these genes to SSc susceptibility, their correlation with the clinical and autoantibody profile and the prevalence of Amerindian, Caucasian and African alleles, blocks and haplotypes in this population.

resultsOur study revealed that class I block HLA-C*12:03-B*18:01 was important to map susceptibility to diffuse cutaneous (dc) SSc, HLA-C*07:01-B*08:01 block to map the susceptibility role of HLA-B*08:01 to develop SSc, and the C*07:02-B*39:05 and C*07:02-B*39:06 blocks to map the protective role of C*07:02 in SSc. We also confirmed previous associations of HLA-DRB1*11:04 and -DRB1*01 to susceptibility to develop SSc. Importantly, we mapped the protective role of DQB1*03:01 using three Amerindian blocks. We also found a significant association for the presence of anti-Topoisomerase I antibody with HLA-DQB1*04:02, present in an Amerindian block (DRB1*08:02-DQB1*04:02), and we found several alleles associated to internal organ damage. The admixture estimations revealed a lower proportion of the Amerindian genetic component among SSc patients.

conclusionThis is the first report of the diversity of HLA class I and II alleles and haplotypes Mexican patients with SSc. Our findings suggest that HLA class I and class II genes contribute to the protection and susceptibility to develop SSc and its different clinical presentations as well as different autoantibody profiles in Mexicans.

Indexed as

AllelesAutoantibodiesBlack PeopleCase-Control StudiesDemographyDisease SusceptibilityDNA TopoisomerasesFemaleHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA-DQ beta-ChainsHumansMaleMexicoMiddle AgedPrincipal Component AnalysisAutoantibodiesDNA TopoisomerasesHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA-DQB1 antigenHLA-DQ beta-Chains

Identifiers

PMID25993664
PMCPMC4439150
OpenAlexW1723875714

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.