Evidence map›Paper›PMID 25993322›Full record

Observational studyKidney international2015

Renal systems biology of patients with systemic inflammatory response syndrome.

Ephraim L Tsalik, Laurel K Willig, Brandon J Rice, Jennifer C van Velkinburgh, Robert P Mohney, Jonathan E McDunn, Darrell L Dinwiddie, Neil A Miller, Eric S Mayer, Seth W Glickman and 11 more

Abstract readMulticenter StudyObservational Study
In one paragraph

Observational study in Kidney international, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
  2. Observational
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Plasma proteomics of acute tubular injury.Nature communications · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. The role of regulatory T cells in the pathogenesis of acute kidney injury.Journal of cellular and molecular medicine · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Ephraim L TsalikEmergency Medicine Service, Durham Veterans Affairs Medical Center, Durham, North Carolina, USA.
Laurel K WilligCenter for Pediatric Genomic Medicine, Children's Mercy Hospitals and Clinic, Kansas City, Missouri, USA.
Brandon J RiceNational Center for Genome Resources, Santa Fe, New Mexico, USA.
Jennifer C van VelkinburghNational Center for Genome Resources, Santa Fe, New Mexico, USA.
Robert P MohneyMetabolon, Durham, North Carolina, USA.
Jonathan E McDunnMetabolon, Durham, North Carolina, USA.
Darrell L DinwiddieNational Center for Genome Resources, Santa Fe, New Mexico, USA.
Neil A MillerCenter for Pediatric Genomic Medicine, Children's Mercy Hospitals and Clinic, Kansas City, Missouri, USA.
Eric S MayerMetabolon, Durham, North Carolina, USA.
Seth W GlickmanDepartment of Emergency Medicine, University of North Carolina School of Medicine, Chapel Hill, North Carolina, USA.
Anja K JaehneDepartment of Emergency Medicine, Henry Ford Hospital, Detroit, Michigan, USA.
Robert H GlewDepartment of Surgery, University of New Mexico, Albuquerque, New Mexico, USA.
Mohan L SoporiDepartment of Respiratory Immunology, Lovelace Respiratory Research Institute, Albuquerque, New Mexico, USA.
Ronny M OteroDepartment of Emergency Medicine, Henry Ford Hospital, Detroit, Michigan, USA.
Kevin S HarrodDepartment of Infectious Disease, Lovelace Respiratory Research Institute, Albuquerque, New Mexico, USA.
Charles B CairnsDepartment of Emergency Medicine, University of North Carolina School of Medicine, Chapel Hill, North Carolina, USA.
Vance G FowlerDepartment of Medicine, Duke University Medical Center, Durham, North Carolina, USA.
Emanuel P RiversDepartment of Emergency Medicine, Henry Ford Hospital, Detroit, Michigan, USA.
Christopher W WoodsDepartment of Medicine, Duke University Medical Center, Durham, North Carolina, USA.
Stephen F KingsmoreCenter for Pediatric Genomic Medicine, Children's Mercy Hospitals and Clinic, Kansas City, Missouri, USA.
Raymond J LangleyNational Center for Genome Resources, Santa Fe, New Mexico, USA.

Funding

UNM HSC Clinical and Translational Science CenterUL1TR001449 · NCATS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI CAMPEN, MATTHEW J, PANDHI, NANCY · 2015 to 2024
$36.9M
ZUNI HEALTH INITIATIVE-PILOT STUDYP20RR016480 · NCRR · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI GRIFFITH, JEFFREY K · 2001 to 2011
$33.7M
University of New Mexico Center for Metals in Biology and Medicine - equipment supplementP20GM130422 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Eliane El Hayek · 2020 to 2026
$20.4M
University of New Mexico Clinical and Translational Science CenterKL2TR001448 · NCATS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI CANNON, JUDY LIN · 2015 to 2024
$3.5M
Plasma Protein Biomarker-Based Diagnostics Of Outcome In Sepsis and CAPU01AI066569 · NIAID · NATIONAL CENTER FOR GENOME RESOURCES · PI KINGSMORE, STEPHEN FRANCIS · 2005 to 2010
$2.9M
Detecting hospital-acquired infections using host gene-expression profilesIK2CX000530 · VA · DURHAM VA MEDICAL CENTER · PI TSALIK, EPHRAIM LEE · 2012 to 2014
–
CSRD VA IK2 CX000530NCATS NIH HHS KL2 TR001448NCATS NIH HHS UL1 TR001449NCRR NIH HHS P20 RR016480NCRR NIH HHS P20RR016480NIAID NIH HHS U01 AI066569NIAID NIH HHS U01AI066569NIGMS NIH HHS P20 GM130422PHS HHS HHSN266200400064C
6 · The paper itself

Abstract

A systems biology approach was used to comprehensively examine the impact of renal disease and hemodialysis (HD) on patient response during critical illness. To achieve this, we examined the metabolome, proteome, and transcriptome of 150 patients with critical illness, stratified by renal function. Quantification of plasma metabolites indicated greater change as renal function declined, with the greatest derangements in patients receiving chronic HD. Specifically, 6 uremic retention molecules, 17 other protein catabolites, 7 modified nucleosides, and 7 pentose phosphate sugars increased as renal function declined, consistent with decreased excretion or increased catabolism of amino acids and ribonucleotides. Similarly, the proteome showed increased levels of low-molecular-weight proteins and acute-phase reactants. The transcriptome revealed a broad-based decrease in mRNA levels among patients on HD. Systems integration revealed an unrecognized association between plasma RNASE1 and several RNA catabolites and modified nucleosides. Further, allantoin, N1-methyl-4-pyridone-3-carboxamide, and N-acetylaspartate were inversely correlated with the majority of significantly downregulated genes. Thus, renal function broadly affected the plasma metabolome, proteome, and peripheral blood transcriptome during critical illness; changes were not effectively mitigated by hemodialysis. These studies allude to several novel mechanisms whereby renal dysfunction contributes to critical illness.

Indexed as

Systems BiologyAcute Kidney InjuryAdultAgedAged, 80 and overBiomarkersBlood ProteinsCritical IllnessFemaleGene Expression ProfilingGene Expression RegulationHumansKidneyKidney Function TestsMaleMetabolomicsBiomarkersBlood ProteinsRNA, Messenger

Identifiers

PMID25993322
PMCPMC4591107

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.