ArticleInternational journal of molecular sciences2015
Comparative Analysis of Anther Transcriptome Profiles of Two Different Rice Male Sterile Lines Genotypes under Cold Stress.
Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.
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Who cites it
44 citing papers in PubMed, 1 synthesis or guideline pooled it, 86 citations in OpenAlex.
- Genome-wide lncRNAs identification and association analysis for cold-responsive genes at the booting stage in rice (Oryza sativa L.).The plant genome · 2020Pooled it
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- Investigating how reproductive traits in rice respond to abiotic stress.Journal of experimental botany · 2025Review
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- Article
- AP2/EREBP Pathway Plays an Important Role in Chaling Wild Rice Tolerance to Cold Stress.International journal of molecular sciences · 2023Article
- Article
- Oligomeric Proanthocyanidins Confer Cold Tolerance in Rice through Maintaining Energy Homeostasis.Antioxidants (Basel, Switzerland) · 2022Article
- Isolation and characterization of wheat ice recrystallisation inhibition gene promoter involved in low temperature and methyl jasmonate responses.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Comparison of anther transcriptomes in response to cold stress at the reproductive stage between susceptible and resistant Japonica rice varieties.BMC plant biology · 2022Article
- Combination of Genomics, Transcriptomics Identifies Candidate Loci Related to Cold Tolerance in Dongxiang Wild Rice.Plants (Basel, Switzerland) · 2022Article
- Transcriptome analysis of the winter wheat Dn1 in response to cold stress.BMC plant biology · 2022Article
- Integrative Analysis of lncRNA-miRNA-mRNA Regulatory Network Reveals the Key lncRNAs Implicated Potentially in the Differentiation of Adipocyte in Goats.Frontiers in physiology · 2022Article
- Transcriptomic and metabolomic profiling of strawberry during postharvest cooling and heat storage.Frontiers in plant science · 2022Article
- Transcriptome sequencing and gene expression profiling ofBreeding science · 2021Article
- Characteristics of Fertility Transition Response to the Cumulative Effective Low Temperature in a Two-Line Male Sterile Rice Cultivar.Rice (New York, N.Y.) · 2021Article
- RNA Sequencing Reveals Rice Genes Involved in Male Reproductive Development under Temperature Alteration.Plants (Basel, Switzerland) · 2021Article
- Identification and analysis of a differentially expressed wheat RING-type E3 ligase in spike primordia development during post-vernalization.Plant cell reports · 2021Article
- Article
- Understanding the molecular mechanism of anther development under abiotic stresses.Plant molecular biology · 2021Review
Corrections and comments
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Authors and funding
8 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Rice is highly sensitive to cold stress during reproductive developmental stages, and little is known about the mechanisms of cold responses in rice anther. Using the HiSeq™ 2000 sequencing platform, the anther transcriptome of photo thermo sensitive genic male sterile lines (PTGMS) rice Y58S and P64S (Pei'ai64S) were analyzed at the fertility sensitive stage under cold stress. Approximately 243 million clean reads were obtained from four libraries and aligned against the oryza indica genome and 1497 and 5652 differentially expressed genes (DEGs) were identified in P64S and Y58S, respectively. Both gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were conducted for these DEGs. Functional classification of DEGs was also carried out. The DEGs common to both genotypes were mainly involved in signal transduction, metabolism, transport, and transcriptional regulation. Most of the DEGs were unique for each comparison group. We observed that there were more differentially expressed MYB (Myeloblastosis) and zinc finger family transcription factors and signal transduction components such as calmodulin/calcium dependent protein kinases in the Y58S comparison group. It was also found that ribosome-related DEGs may play key roles in cold stress signal transduction. These results presented here would be particularly useful for further studies on investigating the molecular mechanisms of rice responses to cold stress.
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