Evidence map›Paper›PMID 25993270›Full record

ArticlePloS one2015

Functional and Spectroscopic Characterization of Chlamydomonas reinhardtii Truncated Hemoglobins.

Chiara Ciaccio, Francisco Ocaña-Calahorro, Enrica Droghetti, Grazia R Tundo, Emanuel Sanz-Luque, Fabio Polticelli, Paolo Visca, Giulietta Smulevich, Paolo Ascenzi, Massimo Coletta

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Nitrite Reductase Activity of Ferrous Nitrobindins: A Comparative Study.International journal of molecular sciences · 2023
    Article
  2. Distinctive structural properties of THB11, a pentacoordinate Chlamydomonas reinhardtii truncated hemoglobin with N- and C-terminal extensions.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2020
    Article
  3. Article
  4. The nitrite reductase activity of horse heart carboxymethylated-cytochrome c is modulated by cardiolipin.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chiara CiaccioDepartment of Clinical Sciences and Translational Medicine, University of Roma Tor Vergata, Roma, Italy; Interuniversity Consortium for the Research on the Chemistry of Metals in Biological Systems, Bari, Italy.
Francisco Ocaña-CalahorroDepartment of Biochemistry and Molecular Biology, Faculty of Sciences, University of Córdoba, Cordoba, Spain.
Enrica DroghettiDepartment of Chemistry "Ugo Schiff", University of Firenze, Sesto Fiorentino (FI), Italy.
Grazia R TundoDepartment of Clinical Sciences and Translational Medicine, University of Roma Tor Vergata, Roma, Italy; Interuniversity Consortium for the Research on the Chemistry of Metals in Biological Systems, Bari, Italy.
Emanuel Sanz-LuqueDepartment of Biochemistry and Molecular Biology, Faculty of Sciences, University of Córdoba, Cordoba, Spain.
Fabio PolticelliDepartment of Sciences, Roma Tre University, Roma, Italy; National Institute of Nuclear Physics, Roma Tre University Section, Roma, Italy.
Paolo ViscaDepartment of Sciences, Roma Tre University, Roma, Italy.
Giulietta SmulevichDepartment of Chemistry "Ugo Schiff", University of Firenze, Sesto Fiorentino (FI), Italy.
Paolo AscenziInterdepartmental Laboratory of Electron Microscopy, Roma Tre University, Roma, Italy.
Massimo ColettaDepartment of Clinical Sciences and Translational Medicine, University of Roma Tor Vergata, Roma, Italy; Interuniversity Consortium for the Research on the Chemistry of Metals in Biological Systems, Bari, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The single-cell green alga Chlamydomonas reinhardtii harbors twelve truncated hemoglobins (Cr-TrHbs). Cr-TrHb1-1 and Cr-TrHb1-8 have been postulated to be parts of the nitrogen assimilation pathway, and of a NO-dependent signaling pathway, respectively. Here, spectroscopic and reactivity properties of Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4, all belonging to clsss 1 (previously known as group N or group I), are reported. The ferric form of Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 displays a stable 6cLS heme-Fe atom, whereas the hexa-coordination of the ferrous derivative appears less strongly stabilized. Accordingly, kinetics of azide binding to ferric Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 are independent of the ligand concentration. Conversely, kinetics of CO or NO2- binding to ferrous Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 are ligand-dependent at low CO or NO2- concentrations, tending to level off at high ligand concentrations, suggesting the presence of a rate-limiting step. In agreement with the different heme-Fe environments, the pH-dependent kinetics for CO and NO2-binding to ferrous Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 are characterized by different ligand-linked protonation events. This raises the question of whether the simultaneous presence in C. reinhardtii of multiple TrHb1s may be related to different regulatory roles.

Indexed as

Models, MolecularAzidesBase SequenceChlamydomonas reinhardtiiDNA PrimersHydrogen-Ion ConcentrationIronKineticsMolecular Sequence DataProtein ConformationSequence Analysis, DNASpectrophotometryTruncated HemoglobinsAzidesDNA PrimersIronTruncated Hemoglobins

Identifiers

PMID25993270
PMCPMC4439042

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.