Evidence map›Paper›PMID 25992732›Full record

ArticleBiophysical journal2015

Swelling and softening of the cowpea chlorotic mottle virus in response to pH shifts.

Bodo D Wilts, Iwan A T Schaap, Christoph F Schmidt

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
8.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
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  7. Physics of viral dynamics.Nature reviews. Physics · 2021
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  8. Single-particle virology.Biophysical reviews · 2020
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  13. Exploring the role of genome and structural ions in preventing viral capsid collapse during dehydration.Journal of physics. Condensed matter : an Institute of Physics journal · 2018
    Article
  14. Varieties of charge distributions in coat proteins of ssRNA+  viruses.Journal of physics. Condensed matter : an Institute of Physics journal · 2018
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Bodo D WiltsDrittes Physikalisches Institut, Fakultät für Physik, Georg-August Universität, Göttingen, Germany.
Iwan A T SchaapDrittes Physikalisches Institut, Fakultät für Physik, Georg-August Universität, Göttingen, Germany; Center for Nanoscale Microscopy and Molecular Physiology of the Brain, Göttingen, Germany.
Christoph F SchmidtDrittes Physikalisches Institut, Fakultät für Physik, Georg-August Universität, Göttingen, Germany. Electronic address: christoph.schmidt@phys.uni-goettingen.de.
University of Göttingen · DENanoscale Microscopy and Molecular Physiology of the Brain Cluster of Excellence 171 — DFG Research Center 103 · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cowpea chlorotic mottle virus (CCMV) forms highly elastic icosahedral protein capsids that undergo a characteristic swelling transition when the pH is raised from 5 to 7. Here, we performed nano-indentation experiments using an atomic force microscope to track capsid swelling and measure the shells' Young's modulus at the same time. When we chelated Ca(2+) ions and raised the pH, we observed a gradual swelling of the RNA-filled capsids accompanied by a softening of the shell. Control experiments with empty wild-type virus and a salt-stable mutant revealed that the softening was not strictly coupled to the swelling of the protein shells. Our data suggest that a pH increase and Ca(2+) chelation lead primarily to a loosening of contacts within the protein shell, resulting in a softening of the capsid. This appears to render the shell metastable and make swelling possible when repulsive forces among the capsid proteins become large enough, which is known to be followed by capsid disassembly at even higher pH. Thus, softening and swelling are likely to play a role during inoculation.

Indexed as

Elastic ModulusBromovirusCalciumCalcium Chelating AgentsCapsidHydrogen-Ion ConcentrationCalciumCalcium Chelating Agents

Identifiers

PMID25992732
PMCPMC4457041
OpenAlexW2123818130

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.