Evidence map›Paper›PMID 25992726›Full record

ArticleBiophysical journal2015

Membrane-mediated regulation of the intrinsically disordered CD3ϵ cytoplasmic tail of the TCR.

Cesar A López, Anurag Sethi, Byron Goldstein, Bridget S Wilson, S Gnanakaran

Open access · greenAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

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  14. Functions of intrinsic disorder in transmembrane proteins.Cellular and molecular life sciences : CMLS · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Cesar A LópezTheoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, New Mexico.
Anurag SethiDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut.
Byron GoldsteinTheoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, New Mexico.
Bridget S WilsonDepartment of Pathology and Cancer Center, University of New Mexico Health Sciences Center, Albuquerque, New Mexico.
S GnanakaranTheoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, New Mexico; New Mexico Consortium, Los Alamos, New Mexico. Electronic address: gnana@lanl.gov.
Los Alamos National Laboratory · USNew Mexico Cancer Center · USYale University · US

Funding

UNM HSC Clinical and Translational Science CenterUL1TR001449 · NCATS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI CAMPEN, MATTHEW J, PANDHI, NANCY · 2015 to 2024
$36.9M
UNM TRAININGP50GM085273 · NIGMS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI EDWARDS, JEREMY S · 2009 to 2018
$26.1M
Receptor Aggregation and Its EffectsR37GM035556 · NIGMS · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI GOLDSTEIN, BYRON B · 2003 to 2012
$6.4M
Functional Analysis of the Sulfotransferase, SULT2B1F32GM065794 · NIGMS · INSTITUTE FOR CANCER RESEARCH · PI GEESE, WILLIAM J · 2002 to 2002
$31k
NCATS NIH HHS UL1 TR001449NIGMS NIH HHS F32 GM065794NIGMS NIH HHS P50GM065794NIGMS NIH HHS P50 GM085273NIGMS NIH HHS R37 GM035556NIGMS NIH HHS R37GM035556
6 · The paper itself

Abstract

The regulation of T-cell-mediated immune responses depends on the phosphorylation of immunoreceptor tyrosine-based activation motifs (ITAMs) on T-cell receptors. Although many details of the signaling cascades are well understood, the initial mechanism and regulation of ITAM phosphorylation remains unknown. We used molecular dynamics simulations to study the influence of different compositions of lipid bilayers on the membrane association of the CD3ϵ cytoplasmic tails of the T-cell receptors. Our results show that binding of CD3ϵ to membranes is modulated by both the presence of negatively charged lipids and the lipid order of the membrane. Free-energy calculations reveal that the protein-membrane interaction is favored by the presence of nearby basic residues and the ITAM tyrosines. Phosphorylation minimizes membrane association, rendering the ITAM motif more accessible to binding partners. In systems mimicking biological membranes, the CD3ϵ chain localization is modulated by different facilitator lipids (e.g., gangliosides or phosphoinositols), revealing a plausible regulatory effect on activation through the regulation of lipid composition in cell membranes.

Indexed as

Amino Acid MotifsAmino Acid SequenceGangliosidesHumansIntrinsically Disordered ProteinsLipid BilayersMolecular Dynamics SimulationMolecular Sequence DataPhosphatidylinositolsProtein BindingProtein Structure, TertiaryReceptors, Antigen, T-CellGangliosidesIntrinsically Disordered ProteinsLipid BilayersPhosphatidylinositolsReceptors, Antigen, T-Cell

Identifiers

PMID25992726
PMCPMC4457001
OpenAlexW2126459563

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.