Evidence map›Paper›PMID 25992725›Full record

ArticleBiophysical journal2015

Identification of the first sodium binding site of the phosphate cotransporter NaPi-IIa (SLC34A1).

Cristina Fenollar-Ferrer, Ian C Forster, Monica Patti, Thomas Knoepfel, Andreas Werner, Lucy R Forrest

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. Structures of the sodium-coupled phosphate importer SLC34A2 reveal a distinct architecture and gating mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
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  5. Article
  6. Article
  7. Article
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  9. Article
  10. Mechanisms of phosphate transport.Nature reviews. Nephrology · 2019
    Review
  11. Review
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  13. Structural models of the NaPi-II sodium-phosphate cotransporters.Pflugers Archiv : European journal of physiology · 2019
    Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

Cristina Fenollar-FerrerComputational Structural Biology Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland.
Ian C ForsterInstitute of Physiology and Zurich Center for Integrative Human Physiology, University of Zürich, Zürich, Switzerland. Electronic address: iforster@access.uzh.ch.
Monica PattiInstitute of Physiology and Zurich Center for Integrative Human Physiology, University of Zürich, Zürich, Switzerland.
Thomas KnoepfelInstitute of Physiology and Zurich Center for Integrative Human Physiology, University of Zürich, Zürich, Switzerland.
Andreas WernerInstitute for Cell and Molecular Biosciences, Epithelial Research Group, University of Newcastle upon Tyne, Newcastle upon Tyne, United Kingdom. Electronic address: andreas.werner@newcastle.ac.uk.
Lucy R ForrestComputational Structural Biology Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland. Electronic address: lucy.forrest@nih.gov.
Swiss Integrative Center for Human Health · CHNational Institute of Neurological Disorders and Stroke · USNational Institutes of Health · USNewcastle University · GBUniversity of Zurich · CH

Funding

Computational Studies of Membrane Transport ProteinsZIANS003139 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI FORREST, LUCY · 2014 to 2025
$13.7M
Intramural NIH HHSThe Dunhill Medical Trust SA10/0210
6 · The paper itself

Abstract

Transporters of the SLC34 family (NaPi-IIa,b,c) catalyze uptake of inorganic phosphate (Pi) in renal and intestinal epithelia. The transport cycle requires three Na(+) ions and one divalent Pi to bind before a conformational change enables translocation, intracellular release of the substrates, and reorientation of the empty carrier. The electrogenic interaction of the first Na(+) ion with NaPi-IIa/b at a postulated Na1 site is accompanied by charge displacement, and Na1 occupancy subsequently facilitates binding of a second Na(+) ion at Na2. The voltage dependence of cotransport and presteady-state charge displacements (in the absence of a complete transport cycle) are directly related to the molecular architecture of the Na1 site. The fact that Li(+) ions substitute for Na(+) at Na1, but not at the other sites (Na2 and Na3), provides an additional tool for investigating Na1 site-specific events. We recently proposed a three-dimensional model of human SLC34a1 (NaPi-IIa) including the binding sites Na2, Na3, and Pi based on the crystal structure of the dicarboxylate transporter VcINDY. Here, we propose nine residues in transmembrane helices (TM2, TM3, and TM5) that potentially contribute to Na1. To verify their roles experimentally, we made single alanine substitutions in the human NaPi-IIa isoform and investigated the kinetic properties of the mutants by voltage clamp and (32)P uptake. Substitutions at five positions in TM2 and one in TM5 resulted in relatively small changes in the substrate apparent affinities, yet at several of these positions, we observed significant hyperpolarizing shifts in the voltage dependence. Importantly, the ability of Li(+) ions to substitute for Na(+) ions was increased compared with the wild-type. Based on these findings, we adjusted the regions containing Na1 and Na3, resulting in a refined NaPi-IIa model in which five positions (T200, Q206, D209, N227, and S447) contribute directly to cation coordination at Na1.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsBinding SitesHumansMolecular Sequence DataProtein BindingSodiumSodium-Phosphate Cotransporter Proteins, Type IIaXenopusSLC34A1 protein, humanSodiumSodium-Phosphate Cotransporter Proteins, Type IIa

Identifiers

PMID25992725
PMCPMC4457043
OpenAlexW2136536849

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.