Evidence map›Paper›PMID 25992615›Full record

ArticlePloS one2015

TRAFD1 (FLN29) Interacts with Plekhm1 and Regulates Osteoclast Acidification and Resorption.

Hanna Witwicka, Hong Jia, Artem Kutikov, Pablo Reyes-Gutierrez, Xiangdong Li, Paul R Odgren

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Rab GTPases in Osteoclastic Bone Resorption and Autophagy.International journal of molecular sciences · 2020
    Review
  4. Article
  5. Genetics of Osteopetrosis.Current osteoporosis reports · 2018
    Review
  6. Rab GTPases in Osteoclastic Endomembrane Systems.BioMed research international · 2018
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hanna WitwickaDepartment of Cell and Developmental Biology, University of Massachusetts Medical School, Worcester, Massachusetts, 01655 United States of America.
Hong JiaDepartment of Cell and Developmental Biology, University of Massachusetts Medical School, Worcester, Massachusetts, 01655 United States of America.
Artem KutikovDepartment of Cell and Developmental Biology, University of Massachusetts Medical School, Worcester, Massachusetts, 01655 United States of America.
Pablo Reyes-GutierrezDepartment of Cell and Developmental Biology, University of Massachusetts Medical School, Worcester, Massachusetts, 01655 United States of America.
Xiangdong LiDepartment of Cell and Developmental Biology, University of Massachusetts Medical School, Worcester, Massachusetts, 01655 United States of America.
Paul R OdgrenDepartment of Cell and Developmental Biology, University of Massachusetts Medical School, Worcester, Massachusetts, 01655 United States of America.
University of Massachusetts Chan Medical School · US

Funding

TOOTH ERUPTION AND BONE RESORPTIONR01DE007444 · NIDCR · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ODGREN, PAUL R · 1986 to 2012
$4.8M
BONE MATRIX AND BONE RESORPTIONR37DE007444 · NIDCR · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MARKS, SANDY C · 1992 to 2001
$739k
Pre-osteoclast fusionR01AR061504 · NIAMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ODGREN, PAUL R · 2013 to 2014
$710k
NIAMS NIH HHS AR061504NIAMS NIH HHS R01 AR061504NIDCR NIH HHS DE007444NIDCR NIH HHS R01 DE007444NIDCR NIH HHS R37 DE007444
6 · The paper itself

Abstract

Plekhm1 is a large, multi-modular, adapter protein implicated in osteoclast vesicle trafficking and bone resorption. In patients, inactivating mutations cause osteopetrosis, and gain-of-function mutations cause osteopenia. Investigations of potential Plekhm1 interaction partners by mass spectrometry identified TRAFD1 (FLN29), a protein previously shown to suppress toll-like receptor signaling in monocytes/macrophages, thereby dampening inflammatory responses to innate immunity. We mapped the binding domains to the TRAFD1 zinc finger (aa 37-60), and to the region of Plekhm1 between its second pleckstrin homology domain and its C1 domain (aa 784-986). RANKL slightly increased TRAFD1 levels, particularly in primary osteoclasts, and the co-localization of TRAFD1 with Plekhm1 also increased with RANKL treatment. Stable knockdown of TRAFD1 in RAW 264.7 cells inhibited resorption activity proportionally to the degree of knockdown, and inhibited acidification. The lack of acidification occurred despite the presence of osteoclast acidification factors including carbonic anhydrase II, a3-V-ATPase, and the ClC7 chloride channel. Secretion of TRAP and cathepsin K were also markedly inhibited in knockdown cells. Truncated Plekhm1 in ia/ia osteopetrotic rat cells prevented vesicle localization of Plekhm1 and TRAFD1. We conclude that TRAFD1, in association with Plekhm1/Rab7-positive late endosomes-early lysosomes, has a previously unknown role in vesicle trafficking, acidification, and resorption in osteoclasts.

Indexed as

AcidsAdaptor Proteins, Signal TransducingAnimalsAutophagy-Related ProteinsCell DifferentiationIntracellular Signaling Peptides and ProteinsMembrane GlycoproteinsMiceOsteoclastsProtein BindingRatsRNA, MessengerAcidsAdaptor Proteins, Signal TransducingAutophagy-Related ProteinsFLN29 protein, mouseIntracellular Signaling Peptides and ProteinsMembrane GlycoproteinsPLEKHM1 protein, humanRNA, Messenger

Identifiers

PMID25992615
PMCPMC4438057
OpenAlexW1587401771

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.