Evidence map›Paper›PMID 25991907›Full record

ArticleMolecular vision2015

An alternative means of retaining ocular structure and improving immunoreactivity for light microscopy studies.

Ning Sun, Brad Shibata, John F Hess, Paul G FitzGerald

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 54 citations in OpenAlex.

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  20. Aged Nrf2-Null Mice Develop All Major Types of Age-Related Cataracts.Investigative ophthalmology & visual science · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ning SunDepartment of Cell Biology and Human Anatomy, School of Medicine, University of California Davis, Davis, CA.
Brad ShibataDepartment of Cell Biology and Human Anatomy, School of Medicine, University of California Davis, Davis, CA.
John F HessDepartment of Cell Biology and Human Anatomy, School of Medicine, University of California Davis, Davis, CA.
Paul G FitzGeraldDepartment of Cell Biology and Human Anatomy, School of Medicine, University of California Davis, Davis, CA.
University of California, Davis · US

Funding

VISION RESEARCH CORE GRANTP30EY012576 · NEI · UNIVERSITY OF CALIFORNIA DAVIS · PI LISA M OAKES · 1999 to 2026
$18.9M
MOLECULAR ANALYSIS OF OCULAR LENS BEADED FILAMENTSR01EY008747 · NEI · UNIVERSITY OF CALIFORNIA DAVIS · PI FITZGERALD, PAUL GILLESPIE · 1990 to 2010
$4.5M
Non Fiber Cell Functions for the Beaded Filament ProteinsR21EY024549 · NEI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI FITZGERALD, PAUL GILLESPIE · 2014 to 2015
$424k
NEI NIH HHS P30 EY012576NEI NIH HHS P30EY012576NEI NIH HHS R01 EY008747NEI NIH HHS R01 EY08747NEI NIH HHS R21 EY024549
6 · The paper itself

Abstract

purposeSeveral properties of ocular tissue make fixation for light microscopy problematic. Because the eye is spherical, immersion fixation necessarily results in a temporal gradient of fixation, with surfaces fixing more rapidly and thoroughly than interior structures. The problem is compounded by the fact that the layers of the eye wall are compositionally quite different, resulting in different degrees of fixation-induced shrinkage and distortion. Collectively, these result in non-uniform preservation, as well as buckling and/or retinal detachment. This gradient problem is most acute for the lens, where the density of proteins can delay fixation of the central lens for days, and where the fixation gradient parallels the age gradient of lens cells, which complicates data interpretation. Our goal was to identify a simple method for minimizing some of the problems arising from immersion fixation, which avoided covalent modification of antigens, retained high quality structure, and maintained tissue in a state that is amenable to common cytochemical techniques.

methodsA simple and inexpensive derivative of the freeze-substitution approach was developed and compared to fixation by immersion in formalin. Preservation of structure, immunoreactivity, GFP and tdTomato fluorescence, lectin reactivity, outer segment auto fluorescence, Click-iT chemistry, compatibility with in situ hybdrdization, and the ability to rehydrate eyes after fixation by freeze substitution for subsequent cryo sectioning were assessed.

resultsAn inexpensive and simple variant of the freeze substitution approach provides excellent structural preservation for light microscopy, and essentially eliminates ocular buckling, retinal detachment, and outer segment auto-fluorescence, without covalent modification of tissue antigens. The approach shows a notable improvement in preservation of immunoreactivity. TdTomato intrinsic fluorescence is also preserved, as is compatibility with in situ hybridization, lectin labeling, and the Click-iT chemistry approach to labeling the thymidine analog EdU. On the negative side, this approach dramatically reduced intrinsic GFP fluorescence.

conclusionsA simple, cost-effective derivative of the freeze substitution process is described that is of particular value in the study of rodent or other small eyes, where fixation gradients, globe buckling, retinal detachment, differential shrinkage, autofluorescence, and tissue immunoreactivity have been problematic.

Indexed as

AnimalsAntigensEyeFixativesFormaldehydeFreeze SubstitutionHistological TechniquesImmunohistochemistryIn Situ HybridizationLuminescent ProteinsMiceMice, Inbred C57BLMice, TransgenicMicroscopyStaining and LabelingTissue FixationAntigensFixativesFormaldehydeLuminescent Proteins

Identifiers

PMID25991907
PMCPMC4403009
OpenAlexW2287163578

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.