Evidence map›Paper›PMID 25991862›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Structural rearrangements in the phage head-to-tail interface during assembly and infection.

Yuriy Chaban, Rudi Lurz, Sandrine Brasilès, Charlène Cornilleau, Matthia Karreman, Sophie Zinn-Justin, Paulo Tavares, Elena V Orlova

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

  1. Article
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  6. Article
  7. Article
  8. Article
  9. Journal of virology · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Observation of Bacteriophage Ultrastructure by Cryo-Electron Microscopy.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  14. Review
  15. Viral Genomic DNA Packaging Machinery.Sub-cellular biochemistry · 2024
    Review
  16. Article
  17. Article
  18. Structure ofViruses · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yuriy ChabanInstitute of Structural and Molecular Biology, Birkbeck College, London WC1E 7HX, United Kingdom;
Rudi LurzMax Planck Institute for Molecular Genetics, D-14195 Berlin, Germany;
Sandrine BrasilèsDepartment of Virology, Institute for Integrative Biology of the Cell (I2BC), UMR 9198 CEA, CNRS, Universitè Paris-Sud, Campus CNRS, 91198 Gif-sur-Yvette cedex, France; Laboratory of Molecular and Structural Virology (VMS), UPR3296 CNRS, Campus CNRS, 91198 Gif-sur-Yvette cedex, France;
Charlène CornilleauLaboratory of Molecular and Structural Virology (VMS), UPR3296 CNRS, Campus CNRS, 91198 Gif-sur-Yvette cedex, France;
Matthia KarremanInstitute of Structural and Molecular Biology, Birkbeck College, London WC1E 7HX, United Kingdom; European Molecular Biology Laboratory, 69117 Heidelberg, Germany;
Sophie Zinn-JustinDepartment of Biochemistry, Biophysics and Structural Biology, Institute for Integrative Biology of the Cell (I2BC), UMR 9198 CEA, CNRS, Universitè Paris-Sud, Campus CEA, Saclay, 91191 Gif-sur-Yvette cedex, France.
Paulo TavaresDepartment of Virology, Institute for Integrative Biology of the Cell (I2BC), UMR 9198 CEA, CNRS, Universitè Paris-Sud, Campus CNRS, 91198 Gif-sur-Yvette cedex, France; Laboratory of Molecular and Structural Virology (VMS), UPR3296 CNRS, Campus CNRS, 91198 Gif-sur-Yvette cedex, France; tavares@vms.cnrs-gif.fr e.orlova@mail.cryst.bbk.ac.uk.
Elena V OrlovaInstitute of Structural and Molecular Biology, Birkbeck College, London WC1E 7HX, United Kingdom; tavares@vms.cnrs-gif.fr e.orlova@mail.cryst.bbk.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council B17360Biotechnology and Biological Sciences Research Council BB/F012705/1NIMHD NIH HHS L60 MD002994
6 · The paper itself

Abstract

Many icosahedral viruses use a specialized portal vertex to control genome encapsidation and release from the viral capsid. In tailed bacteriophages, the portal system is connected to a tail structure that provides the pipeline for genome delivery to the host cell. We report the first, to our knowledge, subnanometer structures of the complete portal-phage tail interface that mimic the states before and after DNA release during phage infection. They uncover structural rearrangements associated with intimate protein-DNA interactions. The portal protein gp6 of bacteriophage SPP1 undergoes a concerted reorganization of the structural elements of its central channel during interaction with DNA. A network of protein-protein interactions primes consecutive binding of proteins gp15 and gp16 to extend and close the channel. This critical step that prevents genome leakage from the capsid is achieved by a previously unidentified allosteric mechanism: gp16 binding to two different regions of gp15 drives correct positioning and folding of an inner gp16 loop to interact with equivalent loops of the other gp16 subunits. Together, these loops build a plug that closes the channel. Gp16 then fastens the tail to yield the infectious virion. The gatekeeper system opens for viral genome exit at the beginning of infection but recloses afterward, suggesting a molecular diaphragm-like mechanism to control DNA efflux. The mechanisms described here, controlling the essential steps of phage genome movements during virus assembly and infection, are likely to be conserved among long-tailed phages, the largest group of viruses in the Biosphere.

Indexed as

Models, MolecularVirus InternalizationBacteriophagesCryoelectron MicroscopyGenome, ViralProtein ConformationViral ProteinsViral Tail ProteinsVirus Assemblyportal protein, Bacteriophage SPP1Viral ProteinsViral Tail Proteinsallosteric mechanismbacteriophageDNA gatekeeperhybrid methodsviral infection

Identifiers

PMID25991862
PMCPMC4460457

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.