Evidence map›Paper›PMID 25991860›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

BAF is a cytosolic DNA sensor that leads to exogenous DNA avoiding autophagy.

Shouhei Kobayashi, Takako Koujin, Tomoko Kojidani, Hiroko Osakada, Chie Mori, Yasushi Hiraoka, Tokuko Haraguchi

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 48 citations in OpenAlex.

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  16. A dynamically evolving war between autophagy and pathogenic microorganisms.Journal of Zhejiang University. Science. B · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Shouhei KobayashiAdvanced ICT Research Institute Kobe, National Institute of Information and Communications Technology, Nishi-ku, Kobe 651-2492, Japan;
Takako KoujinAdvanced ICT Research Institute Kobe, National Institute of Information and Communications Technology, Nishi-ku, Kobe 651-2492, Japan;
Tomoko KojidaniAdvanced ICT Research Institute Kobe, National Institute of Information and Communications Technology, Nishi-ku, Kobe 651-2492, Japan; Laboratory of Electron Microscopy, Faculty of Science, Japan Women's University, Bunkyo-ku, Tokyo 112-8681, Japan;
Hiroko OsakadaAdvanced ICT Research Institute Kobe, National Institute of Information and Communications Technology, Nishi-ku, Kobe 651-2492, Japan;
Chie MoriAdvanced ICT Research Institute Kobe, National Institute of Information and Communications Technology, Nishi-ku, Kobe 651-2492, Japan;
Yasushi HiraokaAdvanced ICT Research Institute Kobe, National Institute of Information and Communications Technology, Nishi-ku, Kobe 651-2492, Japan; Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka 565-0871, Japan; Graduate School of Science, Osaka University, Toyonaka 560-0043, Japan.
Tokuko HaraguchiAdvanced ICT Research Institute Kobe, National Institute of Information and Communications Technology, Nishi-ku, Kobe 651-2492, Japan; Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka 565-0871, Japan; Graduate School of Science, Osaka University, Toyonaka 560-0043, Japan tokuko@nict.go.jp.
National Institute of Information and Communications Technology · JPJapan Women's University · JPOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Knowledge of the mechanisms by which a cell detects exogenous DNA is important for controlling pathogen infection, because most pathogens entail the presence of exogenous DNA in the cytosol, as well as for understanding the cell's response to artificially transfected DNA. The cellular response to pathogen invasion has been well studied. However, spatiotemporal information of the cellular response immediately after exogenous double-stranded DNA (dsDNA) appears in the cytosol is lacking, in part because of difficulties in monitoring when exogenous dsDNA enters the cytosol of the cell. We have recently developed a method to monitor endosome breakdown around exogenous materials using transfection reagent-coated polystyrene beads incorporated into living human cells as the objective for microscopic observations. In the present study, using dsDNA-coated polystyrene beads (DNA-beads) incorporated into living cells, we show that barrier-to-autointegration factor (BAF) bound to exogenous dsDNA immediately after its appearance in the cytosol at endosome breakdown. The BAF(+) DNA-beads then assembled a nuclear envelope (NE)-like membrane and avoided autophagy that targeted the remnants of the endosome membranes. Knockdown of BAF caused a significant decrease in the assembly of NE-like membranes and increased the formation of autophagic membranes around the DNA-beads, suggesting that BAF-mediated assembly of NE-like membranes was required for the DNA-beads to evade autophagy. Importantly, BAF-bound beads without dsDNA also assembled NE-like membranes and avoided autophagy. We propose a new role for BAF: remodeling intracellular membranes upon detection of dsDNA in mammalian cells.

Indexed as

AutophagyBlotting, WesternDNADNA-Binding ProteinsEndosomesFluorescent Antibody Technique, IndirectHeLa CellsHumansIntracellular MembranesMicroscopy, ElectronMicroscopy, FluorescenceMicrospheresNuclear ProteinsRNA, Small InterferingTime-Lapse ImagingBANF1 protein, humanDNADNA-Binding ProteinsNuclear ProteinsRNA, Small Interferingautophagybarrier-to-autointegration factorDNA-beadDNA sensornuclear envelope

Identifiers

PMID25991860
PMCPMC4460496
OpenAlexW1960449473

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.