Evidence map›Paper›PMID 25989359›Full record

ArticleJournal of orthopaedic research : official publication of the Orthopaedic Research Society2015

Genetic loci that regulate ectopic calcification in response to knee trauma in LG/J by SM/J advanced intercross mice.

Muhammad Farooq Rai, Eric J Schmidt, Shingo Hashimoto, James M Cheverud, Linda J Sandell

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of orthopaedic research : official publication of the Orthopaedic Research Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  10. The Kinesin GeneInternational journal of molecular sciences · 2022
    Article
  11. KIF26B Silencing Prevents Osseous Transdifferentiation of Progenitor/Stem Cells and Attenuates Ectopic Calcification in a Murine Model.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2022
    Article
  12. Females and males exhibit similar functional, mechanical, and morphological outcomes in a rat model of posttraumatic elbow contracture.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2021
    Article
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  19. Using Heterogeneous Stocks for Fine-Mapping Genetically Complex Traits.Methods in molecular biology (Clifton, N.J.) · 2019
    Review
  20. A novel mouse model of intervertebral disc degeneration shows altered cell fate and matrix homeostasis.Matrix biology : journal of the International Society for Matrix Biology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Muhammad Farooq RaiDepartment of Orthopaedic Surgery, Musculoskeletal Research Center, Washington University School of Medicine at Barnes-Jewish Hospital, 425 S. Euclid Avenue MS 8233, St. Louis, Missouri, 63110.
Eric J SchmidtDepartment of Orthopaedic Surgery, Musculoskeletal Research Center, Washington University School of Medicine at Barnes-Jewish Hospital, 425 S. Euclid Avenue MS 8233, St. Louis, Missouri, 63110.
Shingo HashimotoDepartment of Orthopaedic Surgery, Musculoskeletal Research Center, Washington University School of Medicine at Barnes-Jewish Hospital, 425 S. Euclid Avenue MS 8233, St. Louis, Missouri, 63110.
James M CheverudDepartment of Biology, Loyola University, 1050 W. Sheridan Road, Chicago, Illinois, 60660.
Linda J SandellDepartment of Orthopaedic Surgery, Musculoskeletal Research Center, Washington University School of Medicine at Barnes-Jewish Hospital, 425 S. Euclid Avenue MS 8233, St. Louis, Missouri, 63110.
Jewish Hospital · USBarnes-Jewish Hospital · USLoyola University Chicago · USWashington University in St. Louis · US

Funding

The Role of the Osteoblast Secretome in Bone FormationP30AR057235 · NIAMS · WASHINGTON UNIVERSITY · PI JOHNSON, AARON N · 2009 to 2018
$5.7M
Skeletal Disorders Training ProgramT32AR060719 · NIAMS · WASHINGTON UNIVERSITY · PI Roberto Civitelli · 2011 to 2026
$4.6M
Genetics of Cartilage Regeneration and OsteoarthritisR01AR063757 · NIAMS · WASHINGTON UNIVERSITY · PI CHEVERUD, JAMES M, SANDELL, LINDA J · 2013 to 2014
$708k
Genetic and Molecular Insights Into Cartilage Regeneration, Primary and PosttraumK99AR064837 · NIAMS · WASHINGTON UNIVERSITY · PI RAI, MUHAMMAD FAROOQ · 2014 to 2015
$175k
NIAMS NIH HHS K99 AR064837NIAMS NIH HHS K99AR064837NIAMS NIH HHS P30 AR057235NIAMS NIH HHS P30-AR057235NIAMS NIH HHS R01 AR063757NIAMS NIH HHS R01AR063757NIAMS NIH HHS T32 AR060719NIAMS NIH HHS T32-AR-060719
6 · The paper itself

Abstract

This study reports on genetic susceptibility to ectopic calcification in the LG/J and SM/J advanced intercross mice. Using 347 mice in 98 full-sibships, destabilization of medial meniscus (DMM) was performed to induce joint injury. We found that joint destabilization instigated ectopic calcifications as detected and quantified by micro-CT. We performed quantitative trait locus (QTL) analysis to map ectopic calcification phenotypes to discrete genomic locations. To validate the functional significance of the selected QTL candidate genes, we compared mRNA expression between parental LG/J and SM/J inbred strains. Overall, we detected 20 QTLs affecting synovial and meniscus calcification phenotypes with 11 QTLs linked to synovial calcification. Functional and bioinformatic analyses of single nucleotide polymorphism (SNP) identified functional classifications relevant to angiogenesis (Myo1e, Kif26b, Nprl3, Stab2, Fam105b), bone metabolism/calcification (Tle3, Tgfb2, Lipc, Nfe2l1, Ank, Fam105b), arthritis (Stab2, Tbx21, Map4k4, Hoxb9, Larp6, Col1a2, Adam10, Timp3, Nfe2l1, Trpm3), and ankylosing-spondylitis (Ank, Pon1, Il1r2, Tbkbp1) indicating that ectopic calcification involves multiple mechanisms. Furthermore, the expression of 11 out of 78 candidate genes was significantly different between LG/J and SM/J. Correlation analysis showed that Aff3, Fam81a, Syn3, and Ank were correlated with synovial calcification. Taken together, our findings of multiple genetic loci suggest the involvement of multiple genes contributing to ectopic calcification.

Indexed as

AnimalsCalcinosisFemaleGene ExpressionHumansJoint DiseasesKnee InjuriesMaleMenisci, TibialMicePhenotypeQuantitative Trait LociSpondylitis, AnkylosingSynovial Membraneadvanced intercross lineectopic calcificationgene expressiongeneticsosteoarthritisQTL analysis

Identifiers

PMID25989359
PMCPMC5025301
OpenAlexW1513340935

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.