Evidence map›Paper›PMID 25988933›Full record

ArticleAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics2015

A genome-wide identified risk variant for PTSD is a methylation quantitative trait locus and confers decreased cortical activation to fearful faces.

Lynn M Almli, Jennifer S Stevens, Alicia K Smith, Varun Kilaru, Qian Meng, Janine Flory, Duna Abu-Amara, Rasha Hammamieh, Ruoting Yang, Kristina B Mercer and 7 more

Open access · greenAbstract read
In one paragraph

Article in American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
24.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. DNA methylation correlates of PTSD: Recent findings and technical challenges.Progress in neuro-psychopharmacology & biological psychiatry · 2019
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Recent Genetics and Epigenetics Approaches to PTSD.Current psychiatry reports · 2018
    Review
  17. A Clinician's Guide to PTSD Biomarkers and Their Potential Future Use.Focus (American Psychiatric Publishing) · 2018
    Review
  18. Neuroepigenetics of Post-Traumatic Stress Disorder.Progress in molecular biology and translational science · 2018
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 2 countries.

Lynn M AlmliDepartment of Psychiatry and Behavioral Sciences, Emory University, Atlanta, Georgia.
Jennifer S StevensDepartment of Psychiatry and Behavioral Sciences, Emory University, Atlanta, Georgia.
Alicia K SmithDepartment of Psychiatry and Behavioral Sciences, Emory University, Atlanta, Georgia.
Varun KilaruDepartment of Psychiatry and Behavioral Sciences, Emory University, Atlanta, Georgia.
Qian MengDepartment of Psychiatry, University Medical Center, New York, New York.
Janine FloryMental Health Care Center, James J. Peters Veterans Affairs Medical Center, Bronx, New York/Traumatic Stress Studies Division, New York, New York.
Duna Abu-AmaraDepartment of Psychiatry, New York University, Steven and Alexandra Cohen Veterans Center for Posttraumatic Stress and Traumatic Brain Injury, New York, New York.
Rasha HammamiehIntegrative Systems Biology, US Army Center for Environmental Health Research, Fort Detrick, Maryland.
Ruoting YangAdvanced Biomedical Computing Center, Frederick National Laboratory for Cancer Research/SAIC-Frederick Inc., Frederick, Maryland.
Kristina B MercerDepartment of Psychiatry and Behavioral Sciences, Emory University, Atlanta, Georgia.
Elizabeth B BinderDepartment of Psychiatry and Behavioral Sciences, Emory University, Atlanta, Georgia.
Bekh BradleyDepartment of Psychiatry and Behavioral Sciences, Emory University, Atlanta, Georgia.
Steven HamiltonDepartment of Psychiatry, University of California, San Francisco, California.
Marti JettIntegrative Systems Biology, US Army Center for Environmental Health Research, Fort Detrick, Maryland.
Rachel YehudaMental Health Care Center, James J. Peters Veterans Affairs Medical Center, Bronx, New York/Traumatic Stress Studies Division, New York, New York.
Charles R MarmarDepartment of Psychiatry, New York University, Steven and Alexandra Cohen Veterans Center for Posttraumatic Stress and Traumatic Brain Injury, New York, New York.
Kerry J ResslerDepartment of Psychiatry and Behavioral Sciences, Emory University, Atlanta, Georgia.
Emory University · USJames J. Peters VA Medical Center · USNew York University · USCenter for Environmental Health · USColumbia University Irving Medical Center · USFrederick National Laboratory for Cancer Research · USUniversity of California, San Francisco · USU.S. Army Research Institute of Environmental Medicine · USVeterans Health Administration · US

Funding

X LINKED NYSTAGMUS SYNDROME WITH FEATURES OF ALBINISMM01RR000039 · NCRR · EMORY UNIVERSITY · PI VACCARINO, VIOLA · 1985 to 2007
$21.3M
Mount Sinai Institutes for Clinical and Translational SciencesUL1TR000067 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SAMPSON, HUGH A · 2012 to 2014
$16.5M
Genetic and Trauma-Related Risk Factors for PTSDR01MH071537 · NIMH · EMORY UNIVERSITY · PI RESSLER, KERRY J. · 2005 to 2014
$8.5M
Genetic and estrogen-dependent regulation of the human PAC1R receptor and PTSDR01MH096764 · NIMH · MCLEAN HOSPITAL · PI RESSLER, KERRY J. · 2012 to 2016
$2.1M
Mechanisms of Intergenerational Impact of Maternal TraumaR01HD071982 · NICHD · EMORY UNIVERSITY · PI BRADLEY, BEKH · 2013 to 2017
$2.1M
Training Program in Human Disease GeneticsT32MH087977 · NIMH · EMORY UNIVERSITY · PI WARREN, STEPHEN T. · 2009 to 2013
$1.3M
Twin, molecular, and developmental approaches to understanding alcohol misuseK02AA018755 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI DICK, DANIELLE M · 2010 to 2019
$1.3M
Genetic influences on developmental heterogeneity of alcohol use disorderK01AA021399 · NIAAA · VIRGINIA COMMONWEALTH UNIVERSITY · PI EDWARDS, ALEXIS C · 2012 to 2016
$707k
Impact of trauma on emotional systems neurobiologyF32MH101976 · NIMH · EMORY UNIVERSITY · PI STEVENS, JENNIFER STRAFFORD · 2014 to 2016
$177k
Genetic and Trauma-Related Risk Factors for PTSD: From GWAS to FunctionR56MH071537 · NIMH · EMORY UNIVERSITY · PI RESSLER, KERRY J. · 2015 to 2015
$148k
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR000067NCATS NIH HHS UL1TR000067NCRR NIH HHS M01 RR000039NCRR NIH HHS M01RR00039NIAAA NIH HHS K01 AA021399NIAAA NIH HHS K02AA018755NICHD NIH HHS R01 HD071982NIMH NIH HHS F32 MH101976NIMH NIH HHS MH071537NIMH NIH HHS MH096764NIMH NIH HHS R01 MH071537NIMH NIH HHS R01 MH096764NIMH NIH HHS R56 MH071537NIMH NIH HHS T32 MH087977NIMH NIH HHS T32 MH87977-5
6 · The paper itself

Abstract

Genetic factors appear to be highly relevant to predicting differential risk for the development of post-traumatic stress disorder (PTSD). In a discovery sample, we conducted a genome-wide association study (GWAS) for PTSD using a small military cohort (Systems Biology PTSD Biomarkers Consortium; SBPBC, N = 147) that was designed as a case-controlled sample of highly exposed, recently returning veterans with and without combat-related PTSD. A genome-wide significant single nucleotide polymorphism (SNP), rs717947, at chromosome 4p15 (N = 147, β = 31.34, P = 1.28 × 10(-8) ) was found to associate with the gold-standard diagnostic measure for PTSD (the Clinician Administered PTSD Scale). We conducted replication and follow-up studies in an external sample, a larger urban community cohort (Grady Trauma Project, GTP, N = 2006), to determine the robustness and putative functionality of this risk variant. In the GTP replication sample, SNP rs717947 associated with PTSD diagnosis in females (N = 2006, P = 0.005), but not males. SNP rs717947 was also found to be a methylation quantitative trait locus (meQTL) in the GTP replication sample (N = 157, P = 0.002). Further, the risk allele of rs717947 was associated with decreased medial and dorsolateral cortical activation to fearful faces (N = 53, P < 0.05) in the GTP replication sample. These data identify a genome-wide significant polymorphism conferring risk for PTSD, which was associated with differential epigenetic regulation and with differential cortical responses to fear in a replication sample. These results may provide new insight into understanding genetic and epigenetic regulation of PTSD and intermediate phenotypes that contribute to this disorder.

Indexed as

FearGenetic Predisposition to DiseaseAdultDNA MethylationEpigenesis, GeneticFaceFacial ExpressionFemaleGenome-Wide Association StudyHumansMalePolymorphism, Single NucleotideQuantitative Trait LociRisk FactorsStress Disorders, Post-TraumaticVeteransepigeneticfMRIGWASmeQTLPTSD

Identifiers

PMID25988933
PMCPMC4844461
OpenAlexW1905797464

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.