Evidence map›Paper›PMID 25988438›Full record

ArticleVector borne and zoonotic diseases (Larchmont, N.Y.)2015

Single-Nucleotide Polymorphisms Reveal Spatial Diversity Among Clones of Yersinia pestis During Plague Outbreaks in Colorado and the Western United States.

Jennifer L Lowell, Michael F Antolin, Gary L Andersen, Ping Hu, Renee P Stokowski, Kenneth L Gage

Open access · greenAbstract read
In one paragraph

Article in Vector borne and zoonotic diseases (Larchmont, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Prairie dog responses to vector control and vaccination during an initialInternational journal for parasitology. Parasites and wildlife · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Exploring and Mitigating Plague for One Health Purposes.Current tropical medicine reports · 2022
    Article
  8. Oral Sylvatic Plague Vaccine Does Not Adequately Protect Prairie Dogs (Vector borne and zoonotic diseases (Larchmont, N.Y.) · 2021
    Article
  9. Plague transforms positive effects of precipitation on prairie dogs to negative effects.International journal for parasitology. Parasites and wildlife · 2021
    Article
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Jennifer L Lowell1Department of Health Sciences, Carroll College, Helena, Montana.
Michael F Antolin2Department of Biology, Colorado State University, Fort Collins, Colorado.
Gary L Andersen3Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California.
Ping Hu3Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California.
Renee P Stokowski4Ariosa Diagnostics, San Jose, California.
Kenneth L Gage5Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, Colorado.
Centers for Disease Control and Prevention · USLawrence Berkeley National Laboratory · USAridis Pharmaceuticals (United States) · USColorado State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn western North America, plague epizootics caused by Yersinia pestis appear to sweep across landscapes, primarily infecting and killing rodents, especially ground squirrels and prairie dogs. During these epizootics, the risk of Y. pestis transmission to humans is highest. While empirical models that include climatic conditions and densities of rodent hosts and fleas can predict when epizootics are triggered, bacterial transmission patterns across landscapes, and the scale at which Y. pestis is maintained in nature during inter-epizootic periods, are poorly defined. Elucidating the spatial extent of Y. pestis clones during epizootics can determine whether bacteria are propagated across landscapes or arise independently from local inter-epizootic maintenance reservoirs. MATERIAL AND

methodsWe used DNA microarray technology to identify single-nucleotide polymorphisms (SNPs) in 34 Y. pestis isolates collected in the western United States from 1980 to 2006, 21 of which were collected during plague epizootics in Colorado. Phylogenetic comparisons were used to elucidate the hypothesized spread of Y. pestis between the mountainous Front Range and the eastern plains of northern Colorado during epizootics. Isolates collected from across the western United States were included for regional comparisons.

resultsBy identifying SNPs that mark individual clones, our results strongly suggest that Y. pestis is maintained locally and that widespread epizootic activity is caused by multiple clones arising independently at small geographic scales. This is in contrast to propagation of individual clones being transported widely across landscapes. Regionally, our data are consistent with the notion that Y. pestis diversifies at relatively local scales following long-range translocation events. We recommend that surveillance and prediction by public health and wildlife management professionals focus more on models of local or regional weather patterns and ecological factors that may increase risk of widespread epizootics, rather than predicting or attempting to explain epizootics on the basis of movement of host species that may transport plague.

Indexed as

Disease OutbreaksAnimalsColoradoGenotypeHumansMicroarray AnalysisMidwestern United StatesNorthwestern United StatesPhylogenyPlaguePolymorphism, Single NucleotideRodent DiseasesSciuridaeSiphonapteraSouthwestern United StatesSpatial AnalysisColoradoPlague–Single-nucleotide polymorphismsSpatial diversityWestern United StatesYersinia pestis

Identifiers

PMID25988438
PMCPMC4449629
OpenAlexW1664774387

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.