Evidence map›Paper›PMID 25988229›Full record

ArticleNeuroImage2016

Vanderbilt University Institute of Imaging Science Center for Computational Imaging XNAT: A multimodal data archive and processing environment.

Robert L Harrigan, Benjamin C Yvernault, Brian D Boyd, Stephen M Damon, Kyla David Gibney, Benjamin N Conrad, Nicholas S Phillips, Baxter P Rogers, Yurui Gao, Bennett A Landman

Abstract read
In one paragraph

Article in NeuroImage, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
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  8. Lifespan development of thalamic nuclei and characterizing thalamic nuclei abnormalities in schizophrenia using normative modeling.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Automatic Preprocessing Pipeline for White Matter Functional Analyses of Large-Scale Databases.Proceedings of SPIE--the International Society for Optical Engineering · 2023
    Article
  13. Article
  14. Article
  15. Lower cerebral oxygen utilization is associated with Alzheimer's disease-related neurodegeneration and poorer cognitive performance among apolipoprotein E ε4 carriers.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2022
    Article
  16. The impact of the lung EDRN-CVC on Phase 1, 2, & 3 biomarker validation studies.Cancer biomarkers : section A of Disease markers · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Neural Correlates of Cardiac Interoceptive Focus Across Development: Implications for Social Symptoms in Autism Spectrum Disorder.Autism research : official journal of the International Society for Autism Research · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Robert L HarriganElectrical Engineering, Vanderbilt University, Nashville, TN 37235, USA. Electronic address: rob.l.harrigan@vanderbilt.edu.
Benjamin C YvernaultElectrical Engineering, Vanderbilt University, Nashville, TN 37235, USA.
Brian D BoydPsychiatry, Vanderbilt University, Nashville, TN 37235, USA.
Stephen M DamonElectrical Engineering, Vanderbilt University, Nashville, TN 37235, USA.
Kyla David GibneyInstitute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA.
Benjamin N ConradInstitute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA; Radiology and Radiological Sciences, Vanderbilt University, Nashville, TN 37235, USA.
Nicholas S PhillipsInstitute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA; Radiology and Radiological Sciences, Vanderbilt University, Nashville, TN 37235, USA.
Baxter P RogersInstitute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA; Radiology and Radiological Sciences, Vanderbilt University, Nashville, TN 37235, USA; Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA; Psychiatry, Vanderbilt University, Nashville, TN 37235, USA.
Yurui GaoInstitute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA; Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA.
Bennett A LandmanElectrical Engineering, Vanderbilt University, Nashville, TN 37235, USA; Institute of Imaging Science, Vanderbilt University, Nashville, TN 37235, USA; Radiology and Radiological Sciences, Vanderbilt University, Nashville, TN 37235, USA; Biomedical Engineering, Vanderbilt University, Nashville, TN 37235, USA.

Funding

VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
Validation of Biomarkers of Risk for the Early Detection of Lung CancerU01CA152662 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DEPPEN, STEPHEN, GROGAN, ERIC L · 2010 to 2025
$12.8M
Training in Vision ResearchT32EY007135 · NEI · VANDERBILT UNIVERSITY · PI GEOFFREY F WOODMAN · 1994 to 2026
$5.8M
RDoC Constructs: Neural Substrates, Heritability, and Relation to PsychopathologyR01MH098098 · NIMH · VANDERBILT UNIVERSITY · PI LAHEY, BENJAMIN B, ZALD, DAVID HAROLD · 2012 to 2015
$4.4M
Microstructural Characterization of the Optic Nerve in Optic NeuritisR01EY023240 · NEI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SMITH, SETH A · 2014 to 2017
$1.0M
Quantitative Image Analysis Techniques for Optic Nerve DiseaseR21EY024036 · NEI · VANDERBILT UNIVERSITY · PI LANDMAN, BENNETT A. · 2014 to 2015
$410k
NCATS NIH HHS 2 UL1 TR000445-06NCATS NIH HHS UL1 TR000445NCI NIH HHS U01 CA152662NCRR NIH HHS UL1 RR024975NCRR NIH HHS UL1 RR024975-01NEI NIH HHS 5T32EY007135NEI NIH HHS R01 EY023240NEI NIH HHS R21 EY024036NEI NIH HHS R21EY024036NEI NIH HHS T32 EY007135NIMH NIH HHS 5R01MH098098NIMH NIH HHS R01 MH098098
6 · The paper itself

Abstract

The Vanderbilt University Institute for Imaging Science (VUIIS) Center for Computational Imaging (CCI) has developed a database built on XNAT housing over a quarter of a million scans. The database provides framework for (1) rapid prototyping, (2) large scale batch processing of images and (3) scalable project management. The system uses the web-based interfaces of XNAT and REDCap to allow for graphical interaction. A python middleware layer, the Distributed Automation for XNAT (DAX) package, distributes computation across the Vanderbilt Advanced Computing Center for Research and Education high performance computing center. All software are made available in open source for use in combining portable batch scripting (PBS) grids and XNAT servers.

Indexed as

Databases, FactualMultimodal ImagingNeuroimagingAccess to InformationElectronic Data ProcessingHumansInformation DisseminationQuality ControlSoftware

Identifiers

PMID25988229
PMCPMC4646735

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.