Evidence map›Paper›PMID 25988154›Full record

ArticleFrontiers in molecular biosciences2014

Trapping a salt-dependent unfolding intermediate of the marginally stable protein Yfh1.

Bartolomé Vilanova, Domenico Sanfelice, Gabriel Martorell, Piero A Temussi, Annalisa Pastore

Abstract read
In one paragraph

Article in Frontiers in molecular biosciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bartolomé VilanovaDepartament de Química, Universitat de les Illes Balears Palma de Mallorca, Spain.
Domenico SanfeliceMolecular Structure Division, National Institute for Medical Research London, UK.
Gabriel MartorellServeis Científico-Tècnics, Universitat de les Illes Balears Palma de Mallorca, Spain.
Piero A TemussiDepartment of Chemistry, Università di Napoli Federico II Napoli, Italy.
Annalisa PastoreMolecular Structure Division, National Institute for Medical Research London, UK.

Funding

Medical Research Council MC_PC_13054Medical Research Council MC_U117584256
6 · The paper itself

Abstract

Yfh1, the yeast ortholog of frataxin, is a protein of limited thermodynamic stability which undergoes cold denaturation at temperatures above the water freezing point. We have previously demonstrated that its stability is strongly dependent on ionic strength and that monovalent or divalent cations are able to considerably stabilize the fold. Here, we present a study of the folded state and of the structural determinants that lead to the strong salt dependence. We demonstrate by nuclear magnetic resonance that, at room temperature, Yfh1 exists as an equilibrium mixture of a folded species and a folding intermediate in slow exchange equilibrium. The equilibrium completely shifts in favor of the folded species by the addition of even small concentrations of salt. We demonstrate that Yfh1 is destabilized by a localized energetic frustration arising from an "electrostatic hinge" made of negatively charged residues mapped in the β-sheet. Salt interactions at this site have a "frustration-relieving" effect. We discuss the consequences of our findings for the function of Yfh1 and for our understanding of protein folding stability.

Indexed as

cold denaturationfrataxinmetallo proteinsNMRthermodynamic stability

Identifiers

PMID25988154
PMCPMC4428383

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.