Evidence map›Paper›PMID 25987506›Full record

ArticleNature communications2015

Intestinal intraepithelial lymphocyte activation promotes innate antiviral resistance.

Mahima Swamy, Lucie Abeler-Dörner, James Chettle, Tanel Mahlakõiv, Delphine Goubau, Probir Chakravarty, George Ramsay, Caetano Reis e Sousa, Peter Staeheli, Barbara A Blacklaws and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 1 synthesis or guideline pooled it, 83 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Impact of the Microbiota on Viral Infections.Annual review of virology · 2023
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Intestinal tissue-resident T cell activation depends on metabolite availability.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Development and function of natural TCRFrontiers in immunology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Mahima SwamyImmunosurveillance lab, Francis Crick Institute, Lincoln's Inn Fields Laboratories, London WC2A 3LY, UK.ORCID 0000-0003-3977-3425
Lucie Abeler-DörnerImmunosurveillance lab, Francis Crick Institute, Lincoln's Inn Fields Laboratories, London WC2A 3LY, UK.
James ChettleDepartment of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.
Tanel MahlakõivInstitute of Virology, University Medical Center, Freiburg D-79104, Germany.
Delphine GoubauImmunosurveillance lab, Francis Crick Institute, Lincoln's Inn Fields Laboratories, London WC2A 3LY, UK.
Probir ChakravartyImmunosurveillance lab, Francis Crick Institute, Lincoln's Inn Fields Laboratories, London WC2A 3LY, UK.
George RamsayCell Signalling and Immunology, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK.
Caetano Reis e SousaImmunosurveillance lab, Francis Crick Institute, Lincoln's Inn Fields Laboratories, London WC2A 3LY, UK.
Peter StaeheliInstitute of Virology, University Medical Center, Freiburg D-79104, Germany.
Barbara A BlacklawsDepartment of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.
Jonathan L HeeneyDepartment of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.
Adrian C HaydayImmunosurveillance lab, Francis Crick Institute, Lincoln's Inn Fields Laboratories, London WC2A 3LY, UK.
The Francis Crick Institute · GBUniversity of Cambridge · GBKing's College London · GBUniversity of Dundee · GBUniversity Medical Center Freiburg · DEUniversity of Freiburg · DE

Funding

Cancer Research UK 15689Cancer Research UK 19309Department of HealthWellcome Trust
6 · The paper itself

Abstract

Unrelenting environmental challenges to the gut epithelium place particular demands on the local immune system. In this context, intestinal intraepithelial lymphocytes (IEL) compose a large, highly conserved T cell compartment, hypothesized to provide a first line of defence via cytolysis of dysregulated intestinal epithelial cells (IEC) and cytokine-mediated re-growth of healthy IEC. Here we show that one of the most conspicuous impacts of activated IEL on IEC is the functional upregulation of antiviral interferon (IFN)-responsive genes, mediated by the collective actions of IFNs with other cytokines. Indeed, IEL activation in vivo rapidly provoked type I/III IFN receptor-dependent upregulation of IFN-responsive genes in the villus epithelium. Consistent with this, activated IEL mediators protected cells against virus infection in vitro, and pre-activation of IEL in vivo profoundly limited norovirus infection. Hence, intraepithelial T cell activation offers an overt means to promote the innate antiviral potential of the intestinal epithelium.

Indexed as

Lymphocyte ActivationAnimalsCaliciviridae InfectionsCytokinesEpithelial CellsFemaleGastroenteritisImmunity, InnateInterferon-alphaInterferon-gammaInterferonsIntestine, SmallLymphocytesMacrophagesMiceMice, Inbred C57BLCytokinesInterferon-alphaInterferon-gammaInterferons

Identifiers

PMID25987506
PMCPMC4479038
OpenAlexW299647456

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.