Evidence map›Paper›PMID 25985299›Full record

ArticlePloS one2015

Oxygen concentration controls epigenetic effects in models of familial paraganglioma.

Yeng F Her, Molly Nelson-Holte, Louis James Maher

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Rates of Pheochromocytoma/Paraganglioma Screening in At-Risk Populations.The Journal of clinical endocrinology and metabolism · 2023
    Article
  6. Article
  7. Review
  8. Succinate Mediates Tumorigenic EffectsFrontiers in endocrinology · 2021
    Article
  9. Review
  10. A conditional mouse model of complex II deficiency manifesting as Leigh-like syndrome.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Pheochromocytoma: Gasping for Air.Hormones & cancer · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yeng F HerDepartment of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, 200 First St. SW, Rochester, MN, 55905, United States of America; Mayo Graduate School, Mayo Medical School and the Mayo Clinic Medical Scientist Training Program, 200 First St. SW, Rochester, MN, 55905, United States of America.
Molly Nelson-HolteDepartment of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, 200 First St. SW, Rochester, MN, 55905, United States of America.
Louis James MaherDepartment of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, 200 First St. SW, Rochester, MN, 55905, United States of America.
Mayo Clinic · US

Funding

TECHNOLOGY NMR SPECTROSCOPYU24DK100469 · NIDDK · MAYO CLINIC ROCHESTER · PI NAIR, K SREEKUMARAN · 2013 to 2017
$9.0M
TRAINING IN TRANSLATIONAL RESEARCH: BENCH TO BEDSIDER25GM055252 · NIGMS · MAYO CLINIC ROCHESTER · PI LUJAN, LUIS, MAHER, LOUIS JAMES · 1996 to 2022
$8.3M
Medical Scientist Traning Program at Mayo ClinicT32GM065841 · NIGMS · MAYO CLINIC ROCHESTER · PI KAUFMANN, SCOTT H, SCHIMMENTI, LISA A · 2003 to 2022
$5.8M
Molecular Basis of Familial ParagangliomaR01CA166025 · NCI · MAYO CLINIC ROCHESTER · PI MAHER, LOUIS JAMES · 2013 to 2017
$1.5M
Understanding the epigenetic basis of human familial paragangliomaF31CA180698 · NCI · MAYO CLINIC ROCHESTER · PI HER, YENG FRANSOUA · 2013 to 2015
$130k
NCI NIH HHS 1F31CA180698NCI NIH HHS CA166025NCI NIH HHS F31 CA180698NCI NIH HHS R01 CA166025NIDDK NIH HHS U24 DK100469NIGMS NIH HHS 5T32GM065841NIGMS NIH HHS R25 GM055252NIGMS NIH HHS T32 GM065841
6 · The paper itself

Abstract

Familial paraganglioma (PGL) is a rare neuroendocrine cancer associated with defects in the genes encoding the subunits of succinate dehydrogenase (SDH), a tricarboxylic acid (TCA) cycle enzyme. For unknown reasons, a higher prevalence of PGL has been reported for humans living at higher altitude, with increased disease aggressiveness and morbidity. In this study, we evaluate the effects of oxygen on epigenetic changes due to succinate accumulation in three SDH loss cell culture models. We test the hypothesis that the mechanism of α-ketoglutarate (α-KG)-dependent dioxygenase enzymes explains the inhibitory synergy of hypoxia and succinate accumulation. We confirm that SDH loss leads to profound succinate accumulation. We further show that hypoxia and succinate accumulation synergistically inhibit α-KG-dependent dioxygenases leading to increased stabilization of transcription factor HIF1α, HIF2α, and hypermethylation of histones and DNA. Increasing oxygen suppresses succinate inhibition of α-KG-dependent dioxygenases. This result provides a possible explanation for the association between hypoxia and PGL, and suggests hyperoxia as a potential novel therapy.

Indexed as

Epigenesis, GeneticModels, Biological5-MethylcytosineAnimalsCase-Control StudiesCytosineDioxygenasesDNA MethylationFibroblastsGene Knockdown TechniquesHEK293 CellsHistonesHumansHypoxia-Inducible Factor 1, alpha SubunitKetoglutaric AcidsMice, Inbred C57BL5-hydroxymethylcytosine5-MethylcytosineCytosineDioxygenasesHistonesHypoxia-Inducible Factor 1, alpha SubunitKetoglutaric AcidsOxygenSuccinate DehydrogenaseSuccinic Acid

Identifiers

PMID25985299
PMCPMC4436181
OpenAlexW1673653576

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.