Evidence map›Paper›PMID 25985234›Full record

ArticleNature immunology2015

The chromatin remodeler Brg1 activates enhancer repertoires to establish B cell identity and modulate cell growth.

Claudia Bossen, Caroline S Murre, Aaron N Chang, Robert Mansson, Hans-Reimer Rodewald, Cornelis Murre

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 148 citations in OpenAlex.

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34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Claudia BossenDepartment of Molecular Biology, University of California, San Diego, La Jolla, California, USA.
Caroline S MurreDepartment of Molecular Biology, University of California, San Diego, La Jolla, California, USA.
Aaron N ChangCenter for Computational Biology, Institute for Genomic Medicine, University of California, San Diego, La Jolla, California, USA.
Robert Mansson1] Department of Laboratory Medicine, Karolinska Institutet, Stockholm, Sweden. [2] Hematology Center, Karolinska University Hospital, Stockholm, Sweden.
Hans-Reimer RodewaldDivision of Cellular Immunology, German Cancer Research Center, Heidelberg, Germany.
Cornelis MurreDepartment of Molecular Biology, University of California, San Diego, La Jolla, California, USA.
University of California, San Diego · USGerman Cancer Research Center · DEKarolinska Institutet · SE

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
U of Calif, San Diego Neuroscience Microscopy ImagingP30NS047101 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G, ZHENG, BINHAI · 2003 to 2022
$9.0M
The 3D-Structures of the Pre-Pro-B and Pro-B Cell GenomesR01AI100880 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MURRE, CORNELIS · 2012 to 2022
$4.1M
E-proteins and EBF1 in B cell differentiationR01AI109599 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MURRE, CORNELIS · 2014 to 2017
$1.6M
NCI NIH HHS P30 CA023100NIAID NIH HHS R01 AI100880NIAID NIH HHS R01 AI109599NINDS NIH HHS P30 NS047101
6 · The paper itself

Abstract

Early B cell development is orchestrated by the combined activities of the transcriptional regulators E2A, EBF1, Foxo1 and Ikaros. However, how the genome-wide binding patterns of these regulators are modulated during B lineage development remains to be determined. Here we found that in lymphoid progenitor cells, the chromatin remodeler Brg1 specified the B cell fate. In committed pro-B cells, Brg1 regulated contraction of the locus encoding the immunoglobulin heavy chain (Igh) and controlled expression of the gene encoding the transcription factor c-Myc (Myc) to modulate the expression of genes encoding products that regulate ribosome biogenesis. In committed pro-B cells, Brg1 suppressed a pre-B lineage-specific pattern of gene expression. Finally, we found that Brg1 acted mechanistically to establish B cell fate and modulate cell growth by facilitating access of lineage-specific transcription factors to enhancer repertoires.

Indexed as

Cell ProliferationAnimalsB-LymphocytesCell DifferentiationCell LineageCells, CulturedChromatin Assembly and DisassemblyDNA HelicasesEnhancer Elements, GeneticFlow CytometryGene Expression RegulationImmunoglobulin Heavy ChainsIn Situ Hybridization, FluorescenceMice, KnockoutMice, TransgenicNuclear ProteinsDNA HelicasesImmunoglobulin Heavy ChainsNuclear ProteinsProto-Oncogene Proteins c-mycSmarca4 protein, mouseTranscription Factors

Identifiers

PMID25985234
PMCPMC4474778
OpenAlexW1884785360

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.