Evidence map›Paper›PMID 25985233›Full record

ArticleNature immunology2015

Mechanisms of clonal evolution in childhood acute lymphoblastic leukemia.

Srividya Swaminathan, Lars Klemm, Eugene Park, Elli Papaemmanuil, Anthony Ford, Soo-Mi Kweon, Daniel Trageser, Brian Hasselfeld, Nadine Henke, Jana Mooster and 8 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 125 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed, 3 pooled it
24.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed, 3 syntheses or guidelines pooled it, 197 citations in OpenAlex.

  1. Pooled it
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  19. Toward a Unified Theory of Why Young People Develop Cancer.Cold Spring Harbor perspectives in medicine · 2024
    Review
  20. Childhood B cell leukemia: Intercepting the paths to progression.BioEssays : news and reviews in molecular, cellular and developmental biology · 2024
    Review

65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 4 countries.

Srividya Swaminathan *Department of Laboratory Medicine, University of California San Francisco, CA, 94143.
Lars Klemm *Department of Laboratory Medicine, University of California San Francisco, CA, 94143.
Eugene ParkDepartment of Laboratory Medicine, University of California San Francisco, CA, 94143.
Elli PapaemmanuilDepartment of Haematology, University of Cambridge, Cambridge UK.
Anthony FordCentre for Evolution and Cancer, The Institute of Cancer Research, London UK.
Soo-Mi KweonUniversity of Southern California, Los Angeles, CA.
Daniel TrageserUniversity of Southern California, Los Angeles, CA.
Brian HasselfeldUniversity of Southern California, Los Angeles, CA.
Nadine HenkeHeinrich-Heine-Universität Düsseldorf, Germany.
Jana MoosterHeinrich-Heine-Universität Düsseldorf, Germany.
Huimin GengDepartment of Laboratory Medicine, University of California San Francisco, CA, 94143.
Klaus SchwarzInstitute for Transfusion Medicine, University of Ulm, Ulm, Germany.
Scott C KoganDepartment of Laboratory Medicine, University of California San Francisco, CA, 94143.
Rafael CasellasGenomics & Immunity, NIAMS, NIH, Bethesda, 20892, MD.
David G SchatzYale University, New Haven, CT.
Michael R LieberUniversity of Southern California, Los Angeles, CA.
Mel F GreavesCentre for Evolution and Cancer, The Institute of Cancer Research, London UK.
Markus MüschenDepartment of Laboratory Medicine, University of California San Francisco, CA, 94143.
University of California, San Francisco · USUniversity of Southern California · USHeinrich Heine University Düsseldorf · DEBridge University · SSUniversität Ulm · DEUniversity of Cambridge · GBUniversity of Freiburg · DEYale University · US

Funding

RAG and AID biologyZIAAR041148 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI O'SHEA, JOHN · 2009 to 2025
$44.8M
Targeted activation of autoimmune checkpoints in B cell malignanciesR01CA157644 · NCI · YALE UNIVERSITY · PI Markus Müschen · 2011 to 2026
$5.7M
PRE-B CELL RECEPTOR SIGNALING IN ACUTE LYMPHOBLASTIC LEUKEMIAR01CA137060 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MÜSCHEN, MARKUS · 2009 to 2016
$2.7M
AID-mediated genetic instability in BCR-ABL1-transformed B cell lineage leukemiaR01CA139032 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MÜSCHEN, MARKUS · 2009 to 2013
$1.6M
Negative feedback signaling in tyrosine kinase-driven leukemiaR01CA172558 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MÜSCHEN, MARKUS · 2013 to 2015
$972k
Targeting BCL6 in tyrosine kinase-driven leukemiaR01CA169458 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MÜSCHEN, MARKUS · 2013 to 2015
$972k
Cancer Research UK 18131NCI NIH HHS R01 CA137060NCI NIH HHS R01 CA139032NCI NIH HHS R01 CA157644NCI NIH HHS R01 CA169458NCI NIH HHS R01 CA172558Wellcome Trust 101880Wellcome Trust 105104
6 · The paper itself

Abstract

Childhood acute lymphoblastic leukemia (ALL) can often be traced to a pre-leukemic clone carrying a prenatal genetic lesion. Postnatally acquired mutations then drive clonal evolution toward overt leukemia. The enzymes RAG1-RAG2 and AID, which diversify immunoglobulin-encoding genes, are strictly segregated in developing cells during B lymphopoiesis and peripheral mature B cells, respectively. Here we identified small pre-BII cells as a natural subset with increased genetic vulnerability owing to concurrent activation of these enzymes. Consistent with epidemiological findings on childhood ALL etiology, susceptibility to genetic lesions during B lymphopoiesis at the transition from the large pre-BII cell stage to the small pre-BII cell stage was exacerbated by abnormal cytokine signaling and repetitive inflammatory stimuli. We demonstrated that AID and RAG1-RAG2 drove leukemic clonal evolution with repeated exposure to inflammatory stimuli, paralleling chronic infections in childhood.

Indexed as

AdolescentAICDA (Activation-Induced Cytidine Deaminase)AnimalsAntibody DiversityB-LymphocytesChildChild, PreschoolClonal EvolutionCytidine DeaminaseDNA-Binding ProteinsFemaleFlow CytometryHomeodomain ProteinsHumansImmunoblottingInfantAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseDNA-Binding ProteinsHomeodomain ProteinsRAG-1 proteinV(D)J recombination activating protein 2

Identifiers

PMID25985233
PMCPMC4475638
OpenAlexW1948212455

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.