Evidence map›Paper›PMID 25983733›Full record

ArticleFrontiers in microbiology2015

Paralytic shellfish toxin content is related to genomic sxtA4 copy number in Alexandrium minutum strains.

Anke Stüken, Pilar Riobó, José Franco, Kjetill S Jakobsen, Laure Guillou, Rosa I Figueroa

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

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  10. Scrippsiella acuminata versus Scrippsiella ramonii: A Physiological Comparison.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 4 countries.

Anke StükenDepartment of Biosciences, University of Oslo Oslo, Norway.
Pilar RiobóU.A. Microalgas Nocivas (Consejo Superior de Investigaciones Científicas - Instituto Español de Oceanografía), Instituto de Investigaciones Marinas Vigo, Spain.
José FrancoU.A. Microalgas Nocivas (Consejo Superior de Investigaciones Científicas - Instituto Español de Oceanografía), Instituto de Investigaciones Marinas Vigo, Spain.
Kjetill S JakobsenCentre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo Oslo, Norway.
Laure GuillouLaboratoire Adaptation et Diversité en Milieu Marin, CNRS, UMR 7144 Roscoff, France ; Sorbonne Universités - Université Pierre et Marie Curie, UMR 7144 Roscoff, France.
Rosa I FigueroaAquatic Ecology, Lund University Lund, Sweden ; U.A. Microalgas Nocivas (Consejo Superior de Investigaciones Científicas - Instituto Español de Oceanografía), Instituto Español de Oceanografía Vigo, Spain.
Consejo Superior de Investigaciones Científicas · ESUniversity of Oslo · NOCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dinoflagellates are microscopic aquatic eukaryotes with huge genomes and an unusual cell regulation. For example, most genes are present in numerous copies and all copies seem to be obligatorily transcribed. The consequence of the gene copy number (CPN) for final protein synthesis is, however, not clear. One such gene is sxtA, the starting gene of paralytic shellfish toxin (PST) synthesis. PSTs are small neurotoxic compounds that can accumulate in the food chain and cause serious poisoning incidences when ingested. They are produced by dinoflagellates of the genera Alexandrium, Gymnodium, and Pyrodinium. Here we investigated if the genomic CPN of sxtA4 is related to PST content in Alexandrium minutum cells. SxtA4 is the 4th domain of the sxtA gene and its presence is essential for PST synthesis in dinoflagellates. We used PST and genome size measurements as well as quantitative PCR to analyze sxtA4 CPN and toxin content in 15 A. minutum strains. Our results show a strong positive correlation between the sxtA4 CPN and the total amount of PST produced in actively growing A. minutum cells. This correlation was independent of the toxin profile produced, as long as the strain contained the genomic domains sxtA1 and sxtA4.

Indexed as

Alexandriumcopy number variationDinoflagellategene dosagegenome sizeparalytic shellfish toxin (PST)saxitoxin (STX)sxtA

Identifiers

PMID25983733
PMCPMC4416454
OpenAlexW2050690422

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.