Evidence map›Paper›PMID 25983549›Full record

ReviewCancer informatics2015

Recent Enhancements to the Genetic Risk Prediction Model BRCAPRO.

Emanuele Mazzola, Amanda Blackford, Giovanni Parmigiani, Swati Biswas

Open access · goldAbstract readReview
In one paragraph

Review in Cancer informatics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 49 citations in OpenAlex.

  1. Trial
  2. Trial
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  4. Article
  5. Article
  6. Frontiers in oncology · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Who Should Have Multigene Germline Testing for Hereditary Cancer?Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2022
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Prevalence and Spectrum of GermlineFrontiers in oncology · 2021
    Article
  19. Article
  20. Therapeutic advances in medical oncology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Emanuele MazzolaDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, and Department of Biostatistics, Harvard T.H.Chan School of Public Health, Boston, MA, USA.
Amanda BlackfordDivision of Biostatistics and Bioinformatics, The Johns Hopkins University, School of Medicine, Baltimore, MD, USA.
Giovanni ParmigianiDepartment of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, and Department of Biostatistics, Harvard T.H.Chan School of Public Health, Boston, MA, USA.
Swati BiswasDepartment of Mathematical Sciences, University of Texas at Dallas, Richardson, TX, USA.
The University of Texas at Dallas · US

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI A. Heather Eliassen · 1985 to 2026
$330.6M
Genetic Risk Prediction in Primary CareR03CA173834 · NCI · UNIVERSITY OF TEXAS DALLAS · PI ARUN, BANU K, BISWAS, SWATI · 2013 to 2014
$165k
NCI NIH HHS P30 CA006516NCI NIH HHS R03 CA173834
6 · The paper itself

Abstract

BRCAPRO is a widely used model for genetic risk prediction of breast cancer. It is a function within the R package BayesMendel and is used to calculate the probabilities of being a carrier of a deleterious mutation in one or both of the BRCA genes, as well as the probability of being affected with breast and ovarian cancer within a defined time window. Both predictions are based on information contained in the counselee's family history of cancer. During the last decade, BRCAPRO has undergone several rounds of successive refinements: the current version is part of release 2.1 of BayesMendel. In this review, we showcase some of the most notable features of the software resulting from these recent changes. We provide examples highlighting each feature, using artificial pedigrees motivated by complex clinical examples. We illustrate how BRCAPRO is a comprehensive software for genetic risk prediction with many useful features that allow users the flexibility to incorporate varying amounts of available information.

Indexed as

BRCA1BRCA2BRCAPRObreast cancermutation carrierovarian cancer

Identifiers

PMID25983549
PMCPMC4428390
OpenAlexW1927697689

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.