Evidence map›Paper›PMID 25983544›Full record

ArticleCancer informatics2015

Generalized monotone incremental forward stagewise method for modeling count data: application predicting micronuclei frequency.

Mateusz Makowski, Kellie J Archer

Abstract read
In one paragraph

Article in Cancer informatics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. A Weibull mixture cure frailty model for high-dimensional covariates.Statistical methods in medical research · 2025
    Article
  2. EMT activates exocytotic Rabs to coordinate invasion and immunosuppression in lung cancer.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Mateusz MakowskiDepartment of Biostatistics, Virginia Commonwealth University, Richmond, VA, USA.
Kellie J ArcherDepartment of Biostatistics, Virginia Commonwealth University, Richmond, VA, USA.

Funding

Informatic tools for predicting an ordinal response for high-dimensional dataR01LM011169 · NLM · VIRGINIA COMMONWEALTH UNIVERSITY · PI ARCHER, KELLIE J. · 2012 to 2015
$944k
NLM NIH HHS R01 LM011169
6 · The paper itself

Abstract

The cytokinesis-block micronucleus (CBMN) assay can be used to quantify micronucleus (MN) formation, the outcome measured being MN frequency. MN frequency has been shown to be both an accurate measure of chromosomal instability/DNA damage and a risk factor for cancer. Similarly, the Agilent 4×44k human oligonucleotide microarray can be used to quantify gene expression changes. Despite the existence of accepted methodologies to quantify both MN frequency and gene expression, very little is known about the association between the two. In modeling our count outcome (MN frequency) using gene expression levels from the high-throughput assay as our predictor variables, there are many more variables than observations. Hence, we extended the generalized monotone incremental forward stagewise method for predicting a count outcome for high-dimensional feature settings.

Indexed as

gene expressionhigh-throughputmicronucleipenalized modelPoisson regression

Identifiers

PMID25983544
PMCPMC4415688

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.