Evidence map›Paper›PMID 25983189›Full record

ArticleMutation research2015

MicroRNA transcriptome analysis identifies miR-365 as a novel negative regulator of cell proliferation in Zmpste24-deficient mouse embryonic fibroblasts.

Xing-dong Xiong, Hwa Jin Jung, Saurabh Gombar, Jung Yoon Park, Chun-long Zhang, Huiling Zheng, Jie Ruan, Jiang-bin Li, Matt Kaeberlein, Brian K Kennedy and 3 more

Open access · greenAbstract read
In one paragraph

Article in Mutation research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 3 countries.

Xing-dong XiongInstitute of Aging Research, Guangdong Medical College, Xin Cheng Avenue 1#, Songshan Lake, Dongguan, Guangdong 523808, PR China; Institute of Biochemistry & Molecular Biology, Guangdong Medical College, Zhanjiang 524023, PR China; Key Laboratory for Medical Molecular Diagnostics of Guangdong Province, Dongguan 523808, PR China; Institute of Laboratory Medicine, Guangdong Medical College, Dongguan, Guangdong 523808, PR China.
Hwa Jin JungDepartments of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Saurabh GombarDepartments of Systems Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Jung Yoon ParkDepartments of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Chun-long ZhangInstitute of Aging Research, Guangdong Medical College, Xin Cheng Avenue 1#, Songshan Lake, Dongguan, Guangdong 523808, PR China; Institute of Biochemistry & Molecular Biology, Guangdong Medical College, Zhanjiang 524023, PR China; Key Laboratory for Medical Molecular Diagnostics of Guangdong Province, Dongguan 523808, PR China.
Huiling ZhengInstitute of Aging Research, Guangdong Medical College, Xin Cheng Avenue 1#, Songshan Lake, Dongguan, Guangdong 523808, PR China; Institute of Biochemistry & Molecular Biology, Guangdong Medical College, Zhanjiang 524023, PR China; Key Laboratory for Medical Molecular Diagnostics of Guangdong Province, Dongguan 523808, PR China.
Jie RuanInstitute of Aging Research, Guangdong Medical College, Xin Cheng Avenue 1#, Songshan Lake, Dongguan, Guangdong 523808, PR China; Institute of Biochemistry & Molecular Biology, Guangdong Medical College, Zhanjiang 524023, PR China; Key Laboratory for Medical Molecular Diagnostics of Guangdong Province, Dongguan 523808, PR China; Institute of Laboratory Medicine, Guangdong Medical College, Dongguan, Guangdong 523808, PR China.
Jiang-bin LiInstitute of Aging Research, Guangdong Medical College, Xin Cheng Avenue 1#, Songshan Lake, Dongguan, Guangdong 523808, PR China; Institute of Biochemistry & Molecular Biology, Guangdong Medical College, Zhanjiang 524023, PR China; Key Laboratory for Medical Molecular Diagnostics of Guangdong Province, Dongguan 523808, PR China; Institute of Laboratory Medicine, Guangdong Medical College, Dongguan, Guangdong 523808, PR China.
Matt KaeberleinInstitute of Aging Research, Guangdong Medical College, Xin Cheng Avenue 1#, Songshan Lake, Dongguan, Guangdong 523808, PR China; Department of Pathology, University of Washington, Seattle, WA 98195, USA.
Brian K KennedyInstitute of Aging Research, Guangdong Medical College, Xin Cheng Avenue 1#, Songshan Lake, Dongguan, Guangdong 523808, PR China; The Buck Institute for Research on Aging, Novato, CA 94945, USA.
Zhongjun ZhouInstitute of Aging Research, Guangdong Medical College, Xin Cheng Avenue 1#, Songshan Lake, Dongguan, Guangdong 523808, PR China; Department of Biochemistry, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, PR China.
Xinguang LiuInstitute of Aging Research, Guangdong Medical College, Xin Cheng Avenue 1#, Songshan Lake, Dongguan, Guangdong 523808, PR China; Institute of Biochemistry & Molecular Biology, Guangdong Medical College, Zhanjiang 524023, PR China; Key Laboratory for Medical Molecular Diagnostics of Guangdong Province, Dongguan 523808, PR China; Institute of Laboratory Medicine, Guangdong Medical College, Dongguan, Guangdong 523808, PR China. Electronic address: xgliu64@126.com.
Yousin SuhInstitute of Aging Research, Guangdong Medical College, Xin Cheng Avenue 1#, Songshan Lake, Dongguan, Guangdong 523808, PR China; Departments of Genetics, Albert Einstein College of Medicine, Bronx, NY 10461, USA. Electronic address: yousin.suh@einstein.yu.edu.
Guangdong Medical College · CNAlbert Einstein College of Medicine · USKey Laboratory of Guangdong Province · CN

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
THE IMPACT OF CELLULAR DEFENSE ON THE ROLE OF Ku80 IN GENOME MAINTENANCE AND LONGP01AG017242 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI VIJG, JAN · 1999 to 2023
$46.1M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007288 · NIGMS · YESHIVA UNIVERSITY · PI AKABAS, MYLES H. · 1985 to 2022
$35.6M
STATISTICS AND DATA MANAGEMENT COREP01AG027734 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI BARZILAI, NIR J · 2007 to 2012
$9.3M
Association Analysis- SNPs in Longevity Assurance GenesR01AG024391 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI SUH, YOUSIN · 2004 to 2008
$1.6M
NCI NIH HHS P30 CA013330NIA NIH HHS ANDPO1 AG17242NIA NIH HHS P01 AG017242NIA NIH HHS P01 AG027734NIA NIH HHS R01 AG024391NIGMS NIH HHS T32 GM007288
6 · The paper itself

Abstract

Zmpste24 is a metalloproteinase responsible for the posttranslational processing and cleavage of prelamin A into mature laminA. Zmpste24(-/-) mice display a range of progeroid phenotypes overlapping with mice expressing progerin, an altered version of lamin A associated with Hutchinson-Gilford progeria syndrome (HGPS). Increasing evidence has demonstrated that miRNAs contribute to the regulation of normal aging process, but their roles in progeroid disorders remain poorly understood. Here we report the miRNA transcriptomes of mouse embryonic fibroblasts (MEFs) established from wild type (WT) and Zmpste24(-/-) progeroid mice using a massively parallel sequencing technology. With data from 19.5 × 10(6) reads from WT MEFs and 16.5 × 10(6) reads from Zmpste24(-/-) MEFs, we discovered a total of 306 known miRNAs expressed in MEFs with a wide dynamic range of read counts ranging from 10 to over 1 million. A total of 8 miRNAs were found to be significantly down-regulated, with only 2 miRNAs upregulated, in Zmpste24(-/-) MEFs as compared to WT MEFs. Functional studies revealed that miR-365, a significantly down-regulated miRNA in Zmpste24(-/-) MEFs, modulates cellular growth phenotypes in MEFs. Overexpression of miR-365 in Zmpste24(-/-) MEFs increased cellular proliferation and decreased the percentage of SA-β-gal-positive cells, while inhibition of miR-365 function led to an increase of SA-β-gal-positive cells in WT MEFs. Furthermore, we identified Rasd1, a member of the Ras superfamily of small GTPases, as a functional target of miR-365. While expression of miR-365 suppressed Rasd1 3' UTR luciferase-reporter activity, this effect was lost with mutations in the putative 3' UTR target-site. Consistently, expression levels of miR-365 were found to inversely correlate with endogenous Rasd1 levels. These findings suggest that miR-365 is down-regulated in Zmpste24(-/-) MEFs and acts as a novel negative regulator of Rasd1. Our comprehensive miRNA data provide a resource to study gene regulatory networks in MEFs.

Indexed as

Gene Expression ProfilingAmino Acid SequenceAnimalsCell ProliferationCellular SenescenceDown-RegulationFibroblastsGene LibraryHigh-Throughput Nucleotide SequencingMembrane ProteinsMetalloendopeptidasesMiceMice, KnockoutMicroRNAsMolecular Sequence Dataras ProteinsMembrane ProteinsMetalloendopeptidasesMicroRNAsMIRN365 microRNA, mouseRasd1 protein, mouseras ProteinsZmpste24 protein, mouseHGPSmiR-365miRNAPremature senescenceZmpste24

Identifiers

PMID25983189
PMCPMC4654172
OpenAlexW1979515532

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.