Evidence map›Paper›PMID 25983038›Full record

ArticleMolecular microbiology2015

Repair of transposable phage Mu DNA insertions begins only when the E. coli replisome collides with the transpososome.

Sooin Jang, Rasika M Harshey

Abstract read
In one paragraph

Article in Molecular microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Phage Mu Gam protein promotes NHEJ in concert withProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Article
  8. Article
  9. Review
  10. DNA Transposition at Work.Chemical reviews · 2016
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Sooin JangDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, 78712, USA.
Rasika M HarsheyDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, 78712, USA.

Funding

STUDIES ON BACTERIOPHAGE MU DNA TRANSPOSITIONR01GM033247 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI HARSHEY, RASIKA M · 1985 to 2013
$4.3M
NIGMS NIH HHS GM33247NIGMS NIH HHS R01 GM033247
6 · The paper itself

Abstract

We report a new cellular interaction between the infecting transposable phage Mu and the host Escherichia coli replication machinery during repair of Mu insertions, which involves filling-in of short target gaps on either side of the insertion, concomitant with degradation of extraneous long flanking DNA (FD) linked to Mu. Using the FD as a marker to follow repair, we find that after transposition into the chromosome, the unrepaired Mu is indefinitely stable until the replication fork arrives at the insertion site, whereupon the FD is rapidly degraded. When the fork runs into a Mu target gap, a double strand end (DSE) will result; we demonstrate fork-dependent DSEs proximal to Mu. These findings suggest that Pol III stalled at the transpososome is exploited for co-ordinated repair of both target gaps flanking Mu without replicating the intervening 37 kb of Mu, disassembling the stable transpososome in the process. This work is relevant to all transposable elements, including retroviral elements like HIV-1, which share with Mu the common problem of repair of their flanking target gaps.

Indexed as

DNA RepairBacteriophage muDNA Polymerase IIIDNA ReplicationDNA Transposable ElementsDNA, ViralEscherichia coliRecombination, GeneticTransposasesDNA Polymerase IIIDNA Transposable ElementsDNA, ViralTransposases

Identifiers

PMID25983038
PMCPMC4536152

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.