Evidence map›Paper›PMID 25982817›Full record

ArticleMolecular microbiology2015

Repression by H-NS of genes required for the biosynthesis of the Vibrio cholerae biofilm matrix is modulated by the second messenger cyclic diguanylic acid.

Julio C Ayala, Hongxia Wang, Anisia J Silva, Jorge A Benitez

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
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  11. Motility of Vibrio spp.: regulation and controlling strategies.Applied microbiology and biotechnology · 2020
    Review
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  16. Fur RepressesFrontiers in microbiology · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Julio C AyalaUniversity of Alabama at Birmingham, Department of Microbiology, Birmingham, Alabama.
Hongxia WangMorehouse School of Medicine, Department of Microbiology, Biochemistry and Immunology, Atlanta, Georgia.
Anisia J SilvaMorehouse School of Medicine, Department of Microbiology, Biochemistry and Immunology, Atlanta, Georgia.
Jorge A BenitezMorehouse School of Medicine, Department of Microbiology, Biochemistry and Immunology, Atlanta, Georgia.
Morehouse School of Medicine · USNational Institute for Communicable Disease Control and Prevention · CN

Funding

Regulation of Vibrio cholerae motility, stress response and detachment from intesSC1AI104993 · NIAID · MOREHOUSE SCHOOL OF MEDICINE · PI SILVA-BENITEZ, ANISIA J · 2012 to 2015
$1.3M
Development of a live, genetically-attenuated cholera vaccine prototype that could be delivered as hyperinfective biofilmsR21AI103693 · NIAID · SOUTHERN RESEARCH INSTITUTE · PI BENITEZ, JORGE ANTONIO · 2013 to 2014
$414k
Regulation of Vibrio Biofilm Formation by H-NS Repression and Anti-repression.F31AI106288 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI AYALA, JULIO CESAR · 2014 to 2016
$99k
NIAID NIH HHS 5R21AI103693-03NIAID NIH HHS 5SC1AI104993-03NIAID NIH HHS F31 AI106288NIAID NIH HHS F31AI106288NIAID NIH HHS R21 AI103693NIAID NIH HHS SC1 AI104993
6 · The paper itself

Abstract

Expression of Vibrio cholerae genes required for the biosynthesis of exopolysacchide (vps) and protein (rbm) components of the biofilm matrix is enhanced by cyclic diguanylate (c-di-GMP). In a previous study, we reported that the histone-like nucleoid structuring (H-NS) protein represses the transcription of vpsA, vpsL and vpsT. Here we demonstrate that the regulator VpsT can disrupt repressive H-NS nucleoprotein complexes at the vpsA and vpsL promoters in the presence of c-di-GMP, while H-NS could disrupt the VpsT-promoter complexes in the absence of c-di-GMP. Chromatin immunoprecipitation-Seq showed a remarkable trend for H-NS to cluster at loci involved in biofilm development such as the rbmABCDEF genes. We show that the antagonistic relationship between VpsT and H-NS regulates the expression of the rbmABCDEF cluster. Epistasis analysis demonstrated that VpsT functions as an antirepressor at the rbmA/F, vpsU and vpsA/L promoters. Deletion of vpsT increased H-NS occupancy at these promoters while increasing the c-di-GMP pool had the opposite effect and included the vpsT promoter. The negative effect of c-di-GMP on H-NS occupancy at the vpsT promoter required the regulator VpsR. These results demonstrate that c-di-GMP activates the transcription of genes required for the biosynthesis of the biofilm matrix by triggering a coordinated VpsR- and VpsT-dependent H-NS antirepression cascade.

Indexed as

Bacterial ProteinsBiofilmsCyclic GMPDNA-Binding ProteinsExtracellular MatrixGene Expression Regulation, BacterialProtein BindingProtein BiosynthesisSecond Messenger SystemsVibrio choleraeBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPDNA-Binding ProteinsH-NS protein, bacteriaVpsR protein, Vibrio cholerae

Identifiers

PMID25982817
PMCPMC4617317
OpenAlexW2140500326

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.