Evidence map›Paper›PMID 25981746›Full record

ArticleBMC genomics2015

Clostridium sordellii genome analysis reveals plasmid localized toxin genes encoded within pathogenicity loci.

Edward C Couchman, Hilary P Browne, Matt Dunn, Trevor D Lawley, J Glenn Songer, Val Hall, Liljana Petrovska, Callum Vidor, Milena Awad, Dena Lyras and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Populational genomic insights ofFrontiers in microbiology · 2023
    Article
  5. Bacterial and viral enterocolitis in horses: a review.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2022
    Review
  6. Article
  7. Prevalence and Antimicrobial Resistance ofAntibiotics (Basel, Switzerland) · 2021
    Article
  8. Large Clostridial Toxins: Mechanisms and Roles in Disease.Microbiology and molecular biology reviews : MMBR · 2021
    Review
  9. Article
  10. Genome Sequence Analysis ofFrontiers in microbiology · 2021
    Article
  11. Article
  12. Article
  13. Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
    Article
  14. Gas gangrene in mammals: a review.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
    Review
  15. Paeniclostridium (Clostridium) sordellii-associated enterocolitis in 7 horses.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
    Article
  16. Genomics of the Pathogenic Clostridia.Microbiology spectrum · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. mBio · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Edward C CouchmanDepartment of Life Sciences, Centre for Molecular Bacteriology and Infection, Imperial College London, London, SW7 2AZ, UK. e.couchman11@imperial.ac.uk.
Hilary P BrowneWellcome Trust Sanger Institute, Hinxton, UK. hb4@sanger.ac.uk.
Matt DunnWellcome Trust Sanger Institute, Hinxton, UK. md3@sanger.ac.uk.
Trevor D LawleyWellcome Trust Sanger Institute, Hinxton, UK. tl2@sanger.ac.uk.
J Glenn SongerDepartment of Veterinary Science and Microbiology, University of Arizona, Tucson, USA. gsonger@gmail.com.
Val HallAnaerobe Reference Laboratory, University Hospital of Wales, Cardiff, UK. val.hall@wales.nhs.uk.
Liljana PetrovskaVeterinary Laboratories Agency, Addlestone, Surrey, UK. liljana.petrovska@ahvla.gsi.gov.uk.
Callum VidorDepartment of Microbiology, Monash University, Clayton, VIC, 3800, Australia. callum.vidor@monash.edu.
Milena AwadDepartment of Microbiology, Monash University, Clayton, VIC, 3800, Australia. milena.awad@monash.edu.
Dena LyrasDepartment of Microbiology, Monash University, Clayton, VIC, 3800, Australia. dena.lyras@monash.edu.
Neil F FairweatherDepartment of Life Sciences, Centre for Molecular Bacteriology and Infection, Imperial College London, London, SW7 2AZ, UK. n.fairweather@imperial.ac.uk.
Monash University · AUWellcome Sanger Institute · GBImperial College London · GBAnimal and Plant Health Agency · GBCardiff and Vale University Health Board · GBUniversity of Arizona · US

Funding

Biotechnology and Biological Sciences Research CouncilWellcome TrustWellcome Trust 086418Wellcome Trust 098051
6 · The paper itself

Abstract

backgroundClostridium sordellii can cause severe infections in animals and humans, the latter associated with trauma, toxic shock and often-fatal gynaecological infections. Strains can produce two large clostridial cytotoxins (LCCs), TcsL and TcsH, related to those produced by Clostridium difficile, Clostridium novyi and Clostridium perfringens, but the genetic basis of toxin production remains uncharacterised.

resultsPhylogenetic analysis of the genome sequences of 44 strains isolated from human and animal infections in the UK, US and Australia placed the species into four clades. Although all strains originated from animal or clinical disease, only 5 strains contained LCC genes: 4 strains contain tcsL alone and one strain contains tcsL and tcsH. Four toxin-positive strains were found within one clade. Where present, tcsL and tcsH were localised in a pathogenicity locus, similar to but distinct from that present in C. difficile. In contrast to C. difficile, where the LCCs are chromosomally localised, the C. sordellii tcsL and tcsH genes are localised on plasmids. Our data suggest gain and loss of entire toxigenic plasmids in addition to horizontal transfer of the pathogenicity locus. A high quality, annotated sequence of ATCC9714 reveals many putative virulence factors including neuraminidase, phospholipase C and the cholesterol-dependent cytolysin sordellilysin that are highly conserved between all strains studied.

conclusionsGenome analysis of C. sordellii reveals that the LCCs, the major virulence factors, are localised on plasmids. Many strains do not contain the LCC genes; it is probable that in several of these cases the plasmid has been lost upon laboratory subculture. Our data are consistent with LCCs being the primary virulence factors in the majority of infections, but LCC-negative strains may precipitate certain categories of infection. A high quality genome sequence reveals putative virulence factors whose role in virulence can be investigated.

Indexed as

Bacterial ToxinsChromosome MappingGenetic LociGene Transfer, HorizontalGenome, BacterialNeuraminidaseParaclostridium sordelliiPhylogenyPlasmidsSequence Analysis, DNAType C PhospholipasesVirulence FactorsBacterial ToxinsNeuraminidaseType C PhospholipasesVirulence Factors

Identifiers

PMID25981746
PMCPMC4434542
OpenAlexW1558489272

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.