Evidence map›Paper›PMID 25981039›Full record

ArticleCell reports2015

A Primary Role for the Tsix lncRNA in Maintaining Random X-Chromosome Inactivation.

Srimonta Gayen, Emily Maclary, Emily Buttigieg, Michael Hinten, Sundeep Kalantry

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 87 citations in OpenAlex.

  1. Review
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Srimonta GayenDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI 48105, USA.
Emily MaclaryDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI 48105, USA.
Emily ButtigiegDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI 48105, USA.
Michael HintenDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI 48105, USA.
Sundeep KalantryDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI 48105, USA. Electronic address: kalantry@umich.edu.
University of Michigan–Ann Arbor · US

Funding

PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Initiation of Epigenetic Transcriptional RegulationDP2OD008646 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KALANTRY, SUNDEEP · 2011 to 2011
$2.3M
Career Training in Reproductive BiologyT32HD079342 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Suzanne M MOENTER · 2014 to 2026
$2.3M
Epigenetic Mechanisms of X-chromosome InactivationR00HD055333 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KALANTRY, SUNDEEP · 2009 to 2011
$734k
Mechanistic Analysis of Parent-of-Origin-Specific Gene Expression in the PlacentaF31HD080280 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MACLARY, EMILY TOMPKINS · 2014 to 2015
$67k
NICHD NIH HHS 1F31HD080280-01NICHD NIH HHS F31 HD080280NICHD NIH HHS R00 HD055333NICHD NIH HHS T32 HD079342NIGMS NIH HHS 5-T32-GM07544NIGMS NIH HHS T32 GM007544NIH HHS DP2 OD008646NIH HHS DP2-OD-008646-01
6 · The paper itself

Abstract

Differentiating pluripotent epiblast cells in eutherians undergo random X-inactivation, which equalizes X-linked gene expression between the sexes by silencing one of the two X-chromosomes in females. Tsix RNA is believed to orchestrate the initiation of X-inactivation, influencing the choice of which X remains active by preventing expression of the antisense Xist RNA, which is required to silence the inactive-X. Here we profile X-chromosome activity in Tsix-mutant (X(ΔTsix)) mouse embryonic epiblasts, epiblast stem cells, and embryonic stem cells. Unexpectedly, we find that Xist is stably repressed on the X(ΔTsix) in both sexes in undifferentiated epiblast cells in vivo and in vitro, resulting in stochastic X-inactivation in females despite Tsix-heterozygosity. Tsix is instead required to silence Xist on the active-X as epiblast cells differentiate in both males and females. Thus, Tsix is not required at the onset of random X-inactivation; instead, it protects the active-X from ectopic silencing once X-inactivation has commenced.

Indexed as

Genes, X-LinkedX Chromosome InactivationAnimalsFemaleGene SilencingMaleMiceRNA, Long NoncodingTranscription FactorsRNA, Long NoncodingTranscription FactorsTsix transcript, mouse

Identifiers

PMID25981039
PMCPMC4449283
OpenAlexW1557776005

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.