Evidence map›Paper›PMID 25980808›Full record

ArticleScientific reports2015

Integrated genomics identifies convergence of ankylosing spondylitis with global immune mediated disease pathways.

Mohammed Uddin, Dianne Codner, S M Mahmud Hasan, Stephen W Scherer, Darren D O'Rielly, Proton Rahman

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. IL-23 and axial disease: do they come together?Rheumatology (Oxford, England) · 2021
    Review
  3. IL-23/IL-17 Axis in Inflammatory Rheumatic Diseases.Clinical reviews in allergy & immunology · 2021
    Review
  4. Relationship of CARD8 Gene Polymorphisms with Susceptibility to Ankylosing Spondylitis: A Case-Control Study.Medical science monitor : international medical journal of experimental and clinical research · 2020
    Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
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  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Mohammed UddinGenetics and Genome Biology, The Hospital for Sick Children, Toronto, Ontario, Canada.
Dianne CodnerFaculty of Medicine, Memorial University, Newfoundland, St. John's, Canada.
S M Mahmud HasanFaculty of Medicine, Memorial University, Newfoundland, St. John's, Canada.
Stephen W Scherer1] Genetics and Genome Biology, The Hospital for Sick Children, Toronto, Ontario, Canada [2] McLaughlin Centre, University of Toronto, Toronto, Ontario, Canada [3] Department of Molecular Genetics, University of Toronto, Ontario, Canada.
Darren D O'RiellyFaculty of Medicine, Memorial University, Newfoundland, St. John's, Canada.
Proton RahmanFaculty of Medicine, Memorial University, Newfoundland, St. John's, Canada.
Memorial University of Newfoundland · CAHospital for Sick Children · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

Ankylosing spondylitis(AS), a highly heritable complex inflammatory arthritis. Although, a handful of non-HLA risk loci have been identified, capturing the unexplained genetic contribution to AS pathogenesis remains a challenge attributed to additive, pleiotropic and epistatic-interactions at the molecular level. Here, we developed multiple integrated genomic approaches to quantify molecular convergence of non-HLA loci with global immune mediated diseases. We show that non-HLA genes are significantly sensitive to deleterious mutation accumulation in the general population compared with tolerant genes. Human developmental proteomics (prenatal to adult) analysis revealed that proteins encoded by non-HLA AS risk loci are 2-fold more expressed in adult hematopoietic cells.Enrichment analysis revealed AS risk genes overlap with a significant number of immune related pathways (p < 0.0001 to 9.8 × 0(-12)). Protein-protein interaction analysis revealed non-shared AS risk genes are highly clustered seeds that significantly converge (empirical; p < 0.01 to 1.6 × 10(-4)) into networks of global immune mediated disease risk loci. We have also provided initial evidence for the involvement of STAT2/3 in AS pathogenesis. Collectively, these findings highlight molecular insight on non-HLA AS risk loci that are not exclusively connected with overlapping immune mediated diseases; rather a component of common pathophysiological pathways with other immune mediated diseases. This information will be pivotal to fully explain AS pathogenesis and identify new therapeutic targets.

Indexed as

Genome-Wide Association StudyGenomicsImmunitySignal TransductionDisease SusceptibilityGene Expression RegulationGene Regulatory NetworksGenetic Association StudiesGenetic Predisposition to DiseaseHumansMutationProtein Interaction MappingProtein Interaction MapsSpondylitis, AnkylosingSTAT2 Transcription FactorSTAT3 Transcription FactorSTAT2 Transcription FactorSTAT3 Transcription Factor

Identifiers

PMID25980808
PMCPMC4434845
OpenAlexW236641151

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.