Evidence map›Paper›PMID 25980440›Full record

ArticleOncotarget2015

Genetic alterations of JAK/STAT cascade and histone modification in extranodal NK/T-cell lymphoma nasal type.

Seungbok Lee, Ha Young Park, So Young Kang, Seok Jin Kim, Jinha Hwang, Seungho Lee, Soo Heon Kwak, Kyong Soo Park, Hae Yong Yoo, Won Seog Kim and 2 more

Registry-linked trialOpen access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03598959 (Phase I/II Study of Safety and Efficacy of Tofacitinib Combined With Chidamide in Patients With Relapsed and Refractory Extranodal Natural Killer/T Cell Lymphoma), which is not on this map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
10.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03598959 phase2unknown statusnot on this mapstarted 2019, after this paper: background citation

Phase I/II Study of Safety and Efficacy of Tofacitinib Combined With Chidamide in Patients With Relapsed and Refractory Extranodal Natural Killer/T Cell Lymphoma

TypeinterventionalSponsorSichuan UniversityRan2019 to 2021Enrolled20ConditionsExtranodal NK/T-cell LymphomaArmstofacitinib, chidamide
3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 170 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Mechanisms and Therapeutic Implications of EZH2 in Nasal Diseases.Clinical reviews in allergy & immunology · 2025
    Review
  9. BCOR abnormalities in endometrial stromal sarcoma.Gynecologic oncology reports · 2025
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. EBV-Related Lymphoproliferative Diseases: A Review in Light of New Classifications.Mediterranean journal of hematology and infectious diseases · 2024
    Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Seungbok LeeGenomic Medicine Institute (GMI), Medical Research Center, Seoul National University, Seoul, Korea.
Ha Young ParkDepartment of Biomedical Sciences, Seoul National University Graduate School, Seoul, Korea.
So Young KangDepartment of Pathology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Seok Jin KimDivision of Hematology-Oncology, Internal Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Jinha HwangDepartment of Biomedical Sciences, Seoul National University Graduate School, Seoul, Korea.
Seungho LeeDepartment of Health Sciences and Technology, Samsung Advanced Institute for Health Sciences & Technology, Sungkyunkwan University School of Medicine, Seoul, Korea.
Soo Heon KwakDepartment of Internal Medicine, Seoul National University Hospital, Seoul, Korea.
Kyong Soo ParkDepartment of Internal Medicine, Seoul National University Hospital, Seoul, Korea.
Hae Yong YooDepartment of Health Sciences and Technology, Samsung Advanced Institute for Health Sciences & Technology, Sungkyunkwan University School of Medicine, Seoul, Korea.
Won Seog KimDivision of Hematology-Oncology, Internal Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Jong-Il KimGenomic Medicine Institute (GMI), Medical Research Center, Seoul National University, Seoul, Korea.
Young Hyeh KoDepartment of Pathology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Seoul National University · KRSamsung Medical Center · KRSungkyunkwan University · KRSamsung (South Korea) · KRSeoul National University Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extranodal NK/T-cell lymphoma nasal type (ENKL) is a rare type of non-Hodgkin lymphoma that more frequently occurs in East Asia and Latin America. Even though its molecular background has been discussed in the last few years, the current knowledge does not explain the disease pathogenesis in most cases of ENKL. Here, we performed multiple types of next-generation sequencing on 34 ENKL samples, including whole-exome sequencing (9 cancer tissues and 4 cancer cell lines), targeted sequencing (21 cancer tissues), and RNA sequencing (3 cancer tissues and 4 cancer cell lines). Mutations were found most frequently in 3 genes, STAT3, BCOR, and MLL2 (which were present in 9, 7, and 6 cancer samples, respectively), whereas there were only 2 cases of JAK3 mutation. In total, JAK/STAT pathway- and histone modification-related genes accounted for 55.9% and 38.2% of cancer samples, respectively, and their involvement in ENKL pathogenesis was also supported by gene expression analysis. In addition, we provided 177 genes upregulated only in cancer tissues, which appear to be linked with angiocentric and angiodestructive growth of ENKL. In this study, we propose several novel driver genes of ENKL, and show that these genes and their functional groups may be future therapeutic targets of this disease.

Indexed as

DNA Mutational AnalysisGene Expression ProfilingHigh-Throughput Nucleotide SequencingHistonesHumansJanus KinasesLymphoma, Extranodal NK-T-CellSignal TransductionSTAT Transcription FactorsHistonesJanus KinasesSTAT Transcription Factorschromatin modificationextranodal NK/T-cell lymphoma nasal typeJAK-STAT pathwaynext-generation sequencingsomatic mutation

Identifiers

PMID25980440
PMCPMC4627344
OpenAlexW1864559021

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.