Evidence map›Paper›PMID 25979266›Full record

ArticleNucleic acids research2015

Yeast high mobility group protein HMO1 stabilizes chromatin and is evicted during repair of DNA double strand breaks.

Arvind Panday, LiJuan Xiao, Anne Grove

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Yeast Crf1p: An activator in need is an activator indeed.Computational and structural biotechnology journal · 2022
    Review
  7. On the Interaction Between SMARCAL1 and BRG1.Frontiers in cell and developmental biology · 2022
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Yeast HMO1: Linker Histone Reinvented.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Arvind PandayDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
LiJuan XiaoDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Anne GroveDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA agrove@lsu.edu.ORCID http://orcid.org/0000-0002-4390-0354
Louisiana State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA is packaged into condensed chromatin fibers by association with histones and architectural proteins such as high mobility group (HMGB) proteins. However, this DNA packaging reduces accessibility of enzymes that act on DNA, such as proteins that process DNA after double strand breaks (DSBs). Chromatin remodeling overcomes this barrier. We show here that the Saccharomyces cerevisiae HMGB protein HMO1 stabilizes chromatin as evidenced by faster chromatin remodeling in its absence. HMO1 was evicted along with core histones during repair of DSBs, and chromatin remodeling events such as histone H2A phosphorylation and H3 eviction were faster in absence of HMO1. The facilitated chromatin remodeling in turn correlated with more efficient DNA resection and recruitment of repair proteins; for example, inward translocation of the DNA-end-binding protein Ku was faster in absence of HMO1. This chromatin stabilization requires the lysine-rich C-terminal extension of HMO1 as truncation of the HMO1 C-terminal tail phenocopies hmo1 deletion. Since this is reminiscent of the need for the basic C-terminal domain of mammalian histone H1 in chromatin compaction, we speculate that HMO1 promotes chromatin stability by DNA bending and compaction imposed by its lysine-rich domain and that it must be evicted along with core histones for efficient DSB repair.

Indexed as

Chromatin Assembly and DisassemblyDNA Breaks, Double-StrandedDNA RepairAntigens, NuclearChromatinDNA-Binding ProteinsGene DeletionGenetic LociHigh Mobility Group ProteinsHistonesKu AutoantigenPhosphorylationRad51 RecombinaseSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence DeletionAntigens, NuclearChromatinDNA-Binding ProteinsHigh Mobility Group ProteinsHistonesHMO1 protein, S cerevisiaeKu AutoantigenRAD51 protein, S cerevisiaeRad51 RecombinaseSaccharomyces cerevisiae Proteins

Identifiers

PMID25979266
PMCPMC4499126
OpenAlexW1602034986

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.