Evidence map›Paper›PMID 25978460›Full record

ArticlePloS one2015

Microevolution of Virulence-Related Genes in Helicobacter pylori Familial Infection.

Yoshikazu Furuta, Mutsuko Konno, Takako Osaki, Hideo Yonezawa, Taichiro Ishige, Misaki Imai, Yuh Shiwa, Mari Shibata-Hatta, Yu Kanesaki, Hirofumi Yoshikawa and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Helicobacter pylori Infection in Colombia: Phylogeny, Resistome, and Virulome.APMIS : acta pathologica, microbiologica, et immunologica Scandinavica · 2025
    Article
  2. Review
  3. Pathogenomics of Helicobacter pylori.Current topics in microbiology and immunology · 2023
    Review
  4. Article
  5. mBio · 2020
    Article
  6. Article
  7. Article
  8. Review of current diagnostic methods and advances inWorld journal of gastroenterology · 2019
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Phylogenomics of ColombianGut pathogens · 2017
    Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Yoshikazu FurutaDepartment of Medical Genome Sciences, Graduate School of Frontier Sciences, University of Tokyo, Minato-ku, Tokyo, Japan; Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo, Japan.
Mutsuko KonnoDepartment of Pediatrics, Sapporo Kosei General Hospital, Sapporo-shi, Hokkaido, Japan.
Takako OsakiDepartment of Infectious Diseases, Kyorin University School of Medicine, Mitaka-shi, Tokyo, Japan.
Hideo YonezawaDepartment of Infectious Diseases, Kyorin University School of Medicine, Mitaka-shi, Tokyo, Japan.
Taichiro IshigeGenome Research Center, NODAI Research Institute, Tokyo University of Agriculture, Setagaya-ku, Tokyo, Japan.
Misaki ImaiGenome Research Center, NODAI Research Institute, Tokyo University of Agriculture, Setagaya-ku, Tokyo, Japan.
Yuh ShiwaGenome Research Center, NODAI Research Institute, Tokyo University of Agriculture, Setagaya-ku, Tokyo, Japan.
Mari Shibata-HattaGenome Research Center, NODAI Research Institute, Tokyo University of Agriculture, Setagaya-ku, Tokyo, Japan.
Yu KanesakiGenome Research Center, NODAI Research Institute, Tokyo University of Agriculture, Setagaya-ku, Tokyo, Japan.
Hirofumi YoshikawaGenome Research Center, NODAI Research Institute, Tokyo University of Agriculture, Setagaya-ku, Tokyo, Japan; Department of Bioscience, Tokyo University of Agriculture, Setagaya-ku, Tokyo, Japan.
Shigeru KamiyaDepartment of Infectious Diseases, Kyorin University School of Medicine, Mitaka-shi, Tokyo, Japan.
Ichizo KobayashiDepartment of Medical Genome Sciences, Graduate School of Frontier Sciences, University of Tokyo, Minato-ku, Tokyo, Japan; Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo, Japan.
Tokyo University of Agriculture · JPKyorin University · JPSapporo Kosei General Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Helicobacter pylori, a bacterial pathogen that can infect human stomach causing gastritis, ulcers and cancer, is known to have a high degree of genome/epigenome diversity as the result of mutation and recombination. The bacteria often infect in childhood and persist for the life of the host. One of the reasons of the rapid evolution of H. pylori is that it changes its genome drastically for adaptation to a new host. To investigate microevolution and adaptation of the H. pylori genome, we undertook whole genome sequencing of the same or very similar sequence type in multi-locus sequence typing (MLST) with seven genes in members of the same family consisting of parents and children in Japan. Detection of nucleotide substitutions revealed likely transmission pathways involving children. Nonsynonymous (amino acid changing) mutations were found in virulence-related genes (cag genes, vacA, hcpDX, tnfα, ggt, htrA and the collagenase gene), outer membrane protein (OMP) genes and other cell surface-related protein genes, signal transduction genes and restriction-modification genes. We reconstructed various pathways by which H. pylori can adapt to a new human host, and our results raised the possibility that the mutational changes in virulence-related genes have a role in adaptation to a child host. Changes in restriction-modification genes might remodel the methylome and transcriptome to help adaptation. This study has provided insights into H. pylori transmission and virulence and has implications for basic research as well as clinical practice.

Indexed as

AdolescentAdultBacterial Outer Membrane ProteinsChildDNA, BacterialEvolution, MolecularFemaleGenome, BacterialHelicobacter InfectionsHelicobacter pyloriHumansJapanMaleMiddle AgedMultilocus Sequence TypingSequence Analysis, DNABacterial Outer Membrane ProteinsDNA, Bacterial

Identifiers

PMID25978460
PMCPMC4433339
OpenAlexW244559346

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.