Evidence map›Paper›PMID 25978450›Full record

ArticlePloS one2015

bHLH106 Integrates Functions of Multiple Genes through Their G-Box to Confer Salt Tolerance on Arabidopsis.

Aftab Ahmad, Yasuo Niwa, Shingo Goto, Takeshi Ogawa, Masanori Shimizu, Akane Suzuki, Kyoko Kobayashi, Hirokazu Kobayashi

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Plants (Basel, Switzerland) · 2025
    Article
  8. Article
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  12. Tartary Buckwheat (International journal of molecular sciences · 2023
    Article
  13. Genome-Wide Analysis ofInternational journal of molecular sciences · 2023
    Article
  14. International journal of molecular sciences · 2023
    Article
  15. Review
  16. Review
  17. International journal of molecular sciences · 2023
    Article
  18. Article
  19. Article
  20. International journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Aftab AhmadLaboratory of Plant Molecular Improvement, Graduate School of Nutritional and Environmental Sciences, University of Shizuoka, 1-52 Yada, Suruga, Shizuoka 422-8526, Japan.
Yasuo NiwaLaboratory of Plant Molecular Improvement, Graduate School of Nutritional and Environmental Sciences, University of Shizuoka, 1-52 Yada, Suruga, Shizuoka 422-8526, Japan.
Shingo GotoLaboratory of Plant Molecular Improvement, Graduate School of Nutritional and Environmental Sciences, University of Shizuoka, 1-52 Yada, Suruga, Shizuoka 422-8526, Japan.
Takeshi OgawaLaboratory of Plant Molecular Improvement, Graduate School of Nutritional and Environmental Sciences, University of Shizuoka, 1-52 Yada, Suruga, Shizuoka 422-8526, Japan.
Masanori ShimizuLaboratory of Plant Molecular Improvement, Graduate School of Nutritional and Environmental Sciences, University of Shizuoka, 1-52 Yada, Suruga, Shizuoka 422-8526, Japan.
Akane SuzukiLaboratory of Plant Molecular Improvement, Graduate School of Nutritional and Environmental Sciences, University of Shizuoka, 1-52 Yada, Suruga, Shizuoka 422-8526, Japan.
Kyoko KobayashiLaboratory of Plant Molecular Improvement, Graduate School of Nutritional and Environmental Sciences, University of Shizuoka, 1-52 Yada, Suruga, Shizuoka 422-8526, Japan.
Hirokazu KobayashiLaboratory of Plant Molecular Improvement, Graduate School of Nutritional and Environmental Sciences, University of Shizuoka, 1-52 Yada, Suruga, Shizuoka 422-8526, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An activation-tagging methodology was applied to dedifferentiated calli of Arabidopsis to identify new genes involved in salt tolerance. This identified salt tolerant callus 8 (stc8) as a gene encoding the basic helix-loop-helix transcription factor bHLH106. bHLH106-knockout (KO) lines were more sensitive to NaCl, KCl, LiCl, ABA, and low temperatures than the wild-type. Back-transformation of the KO line rescued its phenotype, and over-expression (OX) of bHLH106 in differentiated plants exhibited tolerance to NaCl. Green fluorescent protein (GFP) fused with bHLH106 revealed that it was localized to the nucleus. Prepared bHLH106 protein was subjected to electrophoresis mobility shift assays against E-box sequences (5'-CANNTG-3'). The G-box sequence 5'-CACGTG-3' had the strongest interaction with bHLH106. bHLH106-OX lines were transcriptomically analyzed, and resultant up- and down-regulated genes selected on the criterion of presence of a G-box sequence. There were 198 genes positively regulated by bHLH106 and 36 genes negatively regulated; these genes possessed one or more G-box sequences in their promoter regions. Many of these genes are known to be involved in abiotic stress response. It is concluded that bHLH106 locates at a branching point in the abiotic stress response network by interacting directly to the G-box in genes conferring salt tolerance on plants.

Indexed as

ArabidopsisArabidopsis ProteinsG-Box Binding FactorsGene Knockout TechniquesGenes, PlantHelix-Turn-Helix MotifsPlants, Genetically ModifiedReal-Time Polymerase Chain ReactionSalt ToleranceArabidopsis ProteinsbHLH106 protein, ArabidopsisG-Box Binding Factors

Identifiers

PMID25978450
PMCPMC4433118

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.