Evidence map›Paper›PMID 25978332›Full record

ArticlePLoS computational biology2015

Distal spike initiation zone location estimation by morphological simulation of ionic current filtering demonstrated in a novel model of an identified Drosophila motoneuron.

Cengiz Günay, Fred H Sieling, Logesh Dharmar, Wei-Hsiang Lin, Verena Wolfram, Richard Marley, Richard A Baines, Astrid A Prinz

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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  9. The Journal of neuroscience : the official journal of the Society for Neuroscience · 2020
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  11. Molecular characterization and distribution of the voltage-gated sodium channel, Para, in the brain of the grasshopper and vinegar fly.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Cengiz GünayDepartment of Biology, Emory University, Atlanta, Georgia, United States of America.
Fred H SielingDepartment of Biology, Emory University, Atlanta, Georgia, United States of America; Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom.
Logesh DharmarDepartment of Biology, Emory University, Atlanta, Georgia, United States of America.
Wei-Hsiang LinDepartment of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States.
Verena WolframDepartment of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States.
Richard MarleyDepartment of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States.
Richard A BainesDepartment of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, Georgia, United States.
Astrid A PrinzDepartment of Biology, Emory University, Atlanta, Georgia, United States of America.
Emory University · USGeorgia Institute of Technology · USUniversity of Manchester · GB

Funding

Wellcome TrustWellcome Trust 087742Wellcome Trust 090798
6 · The paper itself

Abstract

Studying ion channel currents generated distally from the recording site is difficult because of artifacts caused by poor space clamp and membrane filtering. A computational model can quantify artifact parameters for correction by simulating the currents only if their exact anatomical location is known. We propose that the same artifacts that confound current recordings can help pinpoint the source of those currents by providing a signature of the neuron's morphology. This method can improve the recording quality of currents initiated at the spike initiation zone (SIZ) that are often distal to the soma in invertebrate neurons. Drosophila being a valuable tool for characterizing ion currents, we estimated the SIZ location and quantified artifacts in an identified motoneuron, aCC/MN1-Ib, by constructing a novel multicompartmental model. Initial simulation of the measured biophysical channel properties in an isopotential Hodgkin-Huxley type neuron model partially replicated firing characteristics. Adding a second distal compartment, which contained spike-generating Na+ and K+ currents, was sufficient to simulate aCC's in vivo activity signature. Matching this signature using a reconstructed morphology predicted that the SIZ is on aCC's primary axon, 70 μm after the most distal dendritic branching point. From SIZ to soma, we observed and quantified selective morphological filtering of fast activating currents. Non-inactivating K+ currents are filtered ∼3 times less and despite their large magnitude at the soma they could be as distal as Na+ currents. The peak of transient component (NaT) of the voltage-activated Na+ current is also filtered more than the magnitude of slower persistent component (NaP), which can contribute to seizures. The corrected NaP/NaT ratio explains the previously observed discrepancy when the same channel is expressed in different cells. In summary, we used an in vivo signature to estimate ion channel location and recording artifacts, which can be applied to other neurons.

Indexed as

Models, NeurologicalAction PotentialsAnimalsBiophysical PhenomenaComputational BiologyComputer SimulationDrosophila melanogasterElectrophysiological PhenomenaIon ChannelsMotor NeuronsPatch-Clamp TechniquesIon Channels

Identifiers

PMID25978332
PMCPMC4433181
OpenAlexW1827659342

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.