Evidence map›Paper›PMID 25977794›Full record

ArticleScientific data2014

Flow-dependent regulation of genome-wide mRNA and microRNA expression in endothelial cells in vivo.

Sandeep Kumar, Chan Woo Kim, Dong Ju Son, Chih Wen Ni, Hanjoong Jo

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

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  9. Very late vasomotor responses and gene expression with bioresorbable scaffolds and metallic drug-eluting stents.Catheterization and cardiovascular interventions : official journal of the Society for Cardiac Angiography & Interventions · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 3 countries.

Sandeep KumarWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, 1760 Haygood Drive, HSRB E170 , Atlanta, Georgia 30322, USA.
Chan Woo KimWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, 1760 Haygood Drive, HSRB E170 , Atlanta, Georgia 30322, USA.
Dong Ju SonSchool of Applied Biosciences, Kyungpook National University , Daegu 702-701, South Korea.
Chih Wen NiDepartment of Biomedical Engineering, Khalifa University of Science, Technology and Research , Abu Dhabi, UAE.
Hanjoong JoWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, 1760 Haygood Drive, HSRB E170 , Atlanta, Georgia 30322, USA ; Division of Cardiology, Emory University , Atlanta, Georgia 30322, USA.
Emory University · USGeorgia Institute of Technology · USKhalifa University of Science and Technology · AEKyungpook National University · KRThe Wallace H. Coulter Department of Biomedical Engineering · US

Funding

T cell triggering events and hypertensionP01HL095070 · NHLBI · EMORY UNIVERSITY · PI JO, HANJOONG · 2009 to 2019
$20.5M
Shear stress, endothelial miRNAs, and AV calcificationR01HL119798 · NHLBI · EMORY UNIVERSITY · PI JO, HANJOONG, YOGANATHAN, AJIT P · 2013 to 2022
$4.7M
Metabolomics of subclinical and clinical cardiovascular diseaseP20HL113451 · NHLBI · EMORY UNIVERSITY · PI JONES, DEAN PAUL · 2012 to 2016
$4.3M
NHLBI NIH HHS HHSN268201000043CNHLBI NIH HHS HL095070NHLBI NIH HHS HL113451NHLBI NIH HHS HL114772NHLBI NIH HHS P01 HL095070NHLBI NIH HHS P20 HL113451
6 · The paper itself

Abstract

Atherosclerosis preferentially occurs in arterial regions exposed to disturbed blood flow (d-flow), in part, due to alterations in gene expression in the endothelium. While numerous in vitro studies have shown how anti-atherogenic flow and pro-atherogenic flow differently regulate gene expression of cultured endothelial cells, similar in vivo studies have been scarce. Recently, we developed a mouse model of atherosclerosis that rapidly develops robust atherosclerosis by partially ligating the left carotid artery (LCA) branches, while using the contralateral right carotid (RCA) as control. We also developed a novel method to collect endothelial-enriched RNAs from the carotids of these animals, which enabled us to perform genome-wide expression analyses of mRNAs and miRNAs in the arterial endothelium exposed to either d-flow or s-flow. These microarray results were used to identify novel mechanosensitive genes such as DNA methyltransferase-1 and miR-712 that play key roles in atherosclerosis. Here, we report these endothelial mRNA and miRNA expression profiles with in-depth information on experimental procedures along with an example of usage of these data.

Indexed as

MicroRNAsRegional Blood FlowRNA, MessengerAnimalsAtherosclerosisCarotid ArteriesDisease Models, AnimalEndothelium, VascularGene Expression RegulationMaleMiceMicroRNAsRNA, Messenger

Identifiers

PMID25977794
PMCPMC4411008
OpenAlexW2325464869

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.