Evidence map›Paper›PMID 25977781›Full record

ArticleScientific data2014

A draft genome for the African crocodilian trypanosome Trypanosoma grayi.

Steven Kelly, Alasdair Ivens, Paul T Manna, Wendy Gibson, Mark C Field

Abstract readDataset
In one paragraph

Article in Scientific data, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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  6. The ElusivePathogens (Basel, Switzerland) · 2023
    Review
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  17. Study ofMobile DNA · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Steven KellyDepartment of Plant Sciences, University of Oxford , Oxford OX1 3RB, UK.
Alasdair IvensCentre for Immunity, Infection and Evolution, Ashworth Laboratories, University of Edinburgh , Edinburgh EH9 3JT, UK.
Paul T MannaDivision of Biological Chemistry and Drug Discovery, University of Dundee , Dundee DD1 5EH, Scotland, UK.
Wendy GibsonSchool of Biological Sciences, University of Bristol , Bristol BS8 1UG, UK.
Mark C FieldDivision of Biological Chemistry and Drug Discovery, University of Dundee , Dundee DD1 5EH, Scotland, UK.

Funding

Wellcome TrustWellcome Trust 082813
6 · The paper itself

Abstract

The availability of genome sequence data has greatly enhanced our understanding of the adaptations of trypanosomatid parasites to their respective host environments. However, these studies remain somewhat restricted by modest taxon sampling, generally due to focus on the most important pathogens of humans. To address this problem, at least in part, we are releasing a draft genome sequence for the African crocodilian trypanosome, Trypanosoma grayi ANR4. This dataset comprises genomic DNA sequences assembled de novo into contigs, encompassing over 10,000 annotated putative open reading frames and predicted protein products. Using phylogenomic approaches we demonstrate that T. grayi is more closely related to Trypanosoma cruzi than it is to the African trypanosomes T. brucei, T. congolense and T. vivax, despite the fact T. grayi and the African trypanosomes are each transmitted by tsetse flies. The data are deposited in publicly accessible repositories where we hope they will prove useful to the community in evolutionary studies of the trypanosomatids.

Indexed as

DNA, ProtozoanGenome, ProtozoanAnimalsPhylogenyTrypanosomaDNA, Protozoan

Identifiers

PMID25977781
PMCPMC4322581

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.